Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00260 ATGTCCAACTCTATTACCCATCTTCAAAACCAATTTGAGAACCAAGACCTTGATACTTATGGCTCTTCTATGAGGCACAACAATGCATCATTTCCTGAGGCATCATTGGGAGCATTTCCTACTAGCATTGGAGTAGTTGCTGAGGGCTCTGAGATAAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCAGCAAATGAGAGAAATCACCACCAAACTGCTCAAGGGCTTTCTCTTTCTTTAGGCTCTCACATGCTTGTTCCTTCTGATGAATACAGGCATCACCAAAGACCCTTAAACCCTGGTCTCATCAACCCCAATTACTTCATGTCTGGACAAGAGCCACGTGAGGCTTGTAACAACCCACCTGTGGAACAGCAGCATAATATAACCAGTGACTACTTTTTCAACACAGCTGGGAGTTGCACTTTTGCATCTTCATCTTCTTCTGCCCCTTTGAACCGCTCTCCTAATACCACCACCTCTTATGCTGCTGAGTCTTTTGCTGCTGTCATTGGGAACTCCAGGTACCTTAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTCGATAGAATCAACGACAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGGAAGTGCTAGGACACTTTCCTCAGAGTTGAGGAATAATGGTCATTTATTGGCTGGCAAACATGAACATCAAATCAAAATTGCAAGGTTGATTACTTTATTGGATGAGGTTGAGGGAAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCTTTTGAGATGATAGCAGGTTTGGGAGCTGCAAAGAGTTACACTGCTTTGGCACTCCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACATATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGATTGTCTCAACTAAGCTTGTTTGATAGAGACAGCAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCAAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCAATTCTTCGTTCTTGGCTCTTTGAACACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACTGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTCGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTCTTCTGAAGACTCCAACCCGGCTGGTAACAACTACTTGACGAGGGAAGATACCACAGATTGTGTAGAGGATTGA 1344 0.4338 MSNSITHLQNQFENQDLDTYGSSMRHNNASFPEASLGAFPTSIGVVAEGSEISHTRHLMDLLGAAANERNHHQTAQGLSLSLGSHMLVPSDEYRHHQRPLNPGLINPNYFMSGQEPREACNNPPVEQQHNITSDYFFNTAGSCTFASSSSSAPLNRSPNTTTSYAAESFAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINDKYAEKLFRGSRGSARTLSSELRNNGHLLAGKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKSYTALALQAMSRHFCSLRDAILSHINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPAGNNYLTREDTTDCVED 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00260 447 SMART HOX_1 351 415 IPR001356 GO:0003677
Gma06g00260 447 Gene3D - 346 426 - -
Gma06g00260 447 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677|GO:0006355
Gma06g00260 447 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 44 429 - -
Gma06g00260 447 CDD homeodomain 351 412 IPR001356 GO:0003677
Gma06g00260 447 MobiDBLite consensus disorder prediction 420 447 - -
Gma06g00260 447 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 429 - -
Gma06g00260 447 SMART prehox3 167 301 IPR006563 -
Gma06g00260 447 Pfam Associated with HOX 172 299 IPR006563 -
Gma06g00260 447 SUPERFAMILY Homeodomain-like 357 418 IPR009057 -
Gma06g00260 447 ProSiteProfiles 'Homeobox' domain profile. 370 411 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00260 Gma-Chr6 2319321 2320962 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00260 159 430 Homeobox Transcription Factor Family AT2G16400 47.887 2.83e-78 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma06g00260 POX 6.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00260 - - gmx:100807944 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00260 06 2319321 2320962 Gma06g00260 06 2319321 2320962 ECH