Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00248 ATGGCTGACTCAGCCTCAGCCTCAGCCTCTTCTTCCAGAATGTGGTGCTCCATCCCCGAAAGGTTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTATGCCGGCTTCCATGTTGTCTCAAGAGCTGCCCTTAACATGGGCATTAGCAAACTTGTTTTCCCAGTCTACCGCAACATTATCGCTTTTCTCTTGCTCGTTCCTTTTGCCTACTTCTTGGAAAAGAAGGAGAGACCTGCCATTACATTAAACTTCCTCTTACAGTTCTTTCTTCTGGCTCTTGTCGGGATTACAGCGAACCAAGGTTTCTACTTGCTTGGCTTGGACAACACATCCCCTACCTTTGCATCAGCCATCCAGAACTCTGTCCCAGCCATTACATTTCTCATGGCAGTCATACTCAGGATCGAGCAAGTGCGGCTGAACCGAAAGGATGGGATATCGAAGGTGGCGGGAACGATATTCTGTGTGGCTGGGGCAACGGTGATTACACTATACAAGGGTCCAACAATATATAGCCCAACTCCACCTCTACACAGTGAGAGACCAGCAGTAGTTGACTTTGGAACACTCTCACTGGGAGATGCAAAGGGGAAAAACTGGACCCTTGGGTGCCTCTACCTCATAGGGCATTGCTTGTCCTGGTCTGCTTGGCTTGTGCTCCAAGCACCTGTACTCAAGAAGTACCCAGCTCGTCTCTCCGTCACTTCCTATACATGTTTCTTTGGACTCATCCAATTCCTTGTCATCGCTCTCATCGTTGAAAGGGATGCCCAGGCTTGGATTTTCCAATCTGGTGGAGAAGTTTTCACTATTTTATATGCGGGAGTGGTGGCATCTGGAATAGCCTTCGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCTGTGTTCGTTGCCGTGTATCAGCCTGTTCAAACTCTTGTTGTCGCTATTATGGCTTCCATTGCTTTAGGCGAAGAGTTCTACTTGGGAGGGATCATAGGAGCAGTGTTGATCGTTGTGGGACTGTACTTTGTCTTGTGGGGTAAAAGCGAAGAGAGAAAGTTTGCAAAGGAACATGCTGCTATTACGTCCACCCCAGAGCACAGTGGCATCAGGTCCTCAAGCCATGCCAAAACATCACTCACTCAGCCACTTCTCCCTTCATCTACGGAGAATGTCTGA 1170 0.4906 MADSASASASSSRMWCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLVPFAYFLEKKERPAITLNFLLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGISKVAGTIFCVAGATVITLYKGPTIYSPTPPLHSERPAVVDFGTLSLGDAKGKNWTLGCLYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLIQFLVIALIVERDAQAWIFQSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEFYLGGIIGAVLIVVGLYFVLWGKSEERKFAKEHAAITSTPEHSGIRSSSHAKTSLTQPLLPSSTENV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00248 389 Pfam EamA-like transporter family 28 165 IPR000620 GO:0016020|GO:0016021
Gma06g00248 389 Pfam EamA-like transporter family 204 342 IPR000620 GO:0016020|GO:0016021
Gma06g00248 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 347 - -
Gma06g00248 389 PANTHER WAT1-RELATED PROTEIN 16 356 IPR030184 GO:0016021|GO:0022857
Gma06g00248 389 MobiDBLite consensus disorder prediction 362 389 - -
Gma06g00248 389 PANTHER WAT1-RELATED PROTEIN 16 356 - -
Gma06g00248 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 58 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00248 Gma-Chr6 2220896 2224145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00248 1 389 Nodulin-like Gene Family AT1G75500 76.081 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00248 - - gmx:100786714 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00248 06 2220896 2224145 Gma06g00248 06 2220896 2224145 ECH
Gma04g00263 04 2315993 2319472 Gma06g00248 06 2220896 2224145 GST
Gma17g02432 17 42295888 42299970 Gma06g00248 06 2220896 2224145 PCT
Gma14g02106 14 52151123 52155782 Gma06g00248 06 2220896 2224145 PCT
Gma06g00248 06 2220896 2224145 Gma17g02432 17 42295888 42299970 PCT
Gma06g00248 06 2220896 2224145 Gma14g02106 14 52151123 52155782 PCT