Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00227 ATGGAAAATGTCTCTTTTGCCCACGAGTCTAAATCCCTCCATCCCCTAATCCCTCCGCTTCCCACTCCCCTAACTCCAAGCAATGCACAATCTCCTCACCATGCCACCACCCCTGCCACAGATCTGAACATTCGAGGCTTCATGTTTCCGTTGTGTTTCCATCCATGGGGCAATTTGAGAATACGACTTCAAGGCACCCACTTGGGAAGTGTCAACAGCAAAAGTGGTACAGATACAGATACAGACACAACCTGGAAAAAATTCCGACCCCAGCCCTTCACTCTTCTCTCTGCAGCGGAGATTTGGGAGTGTGATCTTCCTGTCTTGGAAGTGCTGCTTGAAGAGGACCTTGGTTTCATATGGTTGCTTGTCATCATTATTTGTCTGGAAGCCTCGAGTCAATATTTAGTTTTTGCTACCATCTGTGGGTTTCTGATGGATGATGCTGGGCATCGTGAGAATGGAAGACACAAAGCAGCAGATCAATATAAATCTGCTCAGGGTCAGTGGTTGATGCAACATCAGCCTTCCATGAAGCAGATTATGGCAATGATTGCTGAAAGAGATGCAGCCATTCAAGAAAGAAATCTGGCCATTTCCGAGAAAAAAGCAGCATATGCTGAGCGTGACATGGCATACATGCAGCGAGATGCtgcaattgcagaacgtaataatgcaatgttggaacgagataatgcaattgcaACTCTTCAGTATCGTGAAACCTCCTTAAGTAGTGGCAGTATGCCATCATGCCCTCCAGGATGCCAAATTTCACGTGGTGTCAAGCATGTACATCATCCCCAACAACAGGTGCACCATATACCTAACATGGGTGATGCCTCTTACAACACAAGGGAAATGCACACAACGGAGGTCCTCCCTGCAGCCCCCATCCCTTCTGAGACTGGGAAGTCAAGGCGGGCCAAGCGACCAAAGGAACCAAAGTCAGCTCCACCTAATAAAAAGACTTCAAAACCCTCAAAAAAAGTCAAGAAGGAGAGTGAAGACTTGAATAATATGTTTGGCAAGGCACATGAGTGGAAGAGTGGTCAGGAAATGGTCAATGGAGGTGATGATCTTAACAAGCAGTTAGCAGTGTCGAAGGCTGATTGGAAAGGTCAGGACTTGGGGTTGAACCAAGTGGCGTATGATGAGTCAACCATGCCAGCGCCAGTATGCTCTTGTACCGGTGTCCTGAGGCAGTGTTACAAATGGGGTAATGGGGGTTGGCAGTCTGCCTGTTGCACAACTACTCTGTCAATGTATCCACTTCCTGCAGTGCCCAACAAGAGACATGCTCGGGTAGGCGGCCGGAAGATGAGTGGGAGTGCTTTCAACAAGCTGCTTAGTCGACTTGCAGCAGAAAGTCATGATCTGTCAAACCCTACTCGTGTCCTCAGTCATCCTGGAACCCTATCTGCGTTAATATGTAAAATCAACTATGAGGTGGCGAATATGAACCCTATCCCTTGGTTCAGCAAATCCATGCTACTACCCGTCTCTGCGTTAAAATTTGGAGACATGCTTACGTTGAAGCAAATCGAAAAATATGCTGGTTTATCTAGGAATGAAGAAATTTTCAATGATAAAGTTCAACCGGTGTGGCACACTCTCAACGACATTATCTGTAAGGAAGTTACTCAATCGTTGCAACAACCTTCAGTTCATGCAGAGTTACTCGCCATCTATCATGGTTTGAAGATAGCTAGAGACAAAGGAATTGGAAGATTGATCTGCGAATCAGATTCGAAGCTAATCACTGGAGAAATCAACATGTTTCATCAATATTTCCCTACCATCACGCTGATCCATTTGTCAAAGCAGATGGATTGGGAGGTGACCTTTGTGCACGTGTACCGTGAAGGGAACAAATGTGCAGATTGGCTTGCAAAGACGGAAAACTCCTCTCAACAGGACTTGATTATTCACTCTGCCAGGCCATATACCAAGCTTACCTTGGTCATGCCATGGGTGTCACAACCCAAATGA 1992 0.4513 MENVSFAHESKSLHPLIPPLPTPLTPSNAQSPHHATTPATDLNIRGFMFPLCFHPWGNLRIRLQGTHLGSVNSKSGTDTDTDTTWKKFRPQPFTLLSAAEIWECDLPVLEVLLEEDLGFIWLLVIIICLEASSQYLVFATICGFLMDDAGHRENGRHKAADQYKSAQGQWLMQHQPSMKQIMAMIAERDAAIQERNLAISEKKAAYAERDMAYMQRDAAIAERNNAMLERDNAIATLQYRETSLSSGSMPSCPPGCQISRGVKHVHHPQQQVHHIPNMGDASYNTREMHTTEVLPAAPIPSETGKSRRAKRPKEPKSAPPNKKTSKPSKKVKKESEDLNNMFGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAESHDLSNPTRVLSHPGTLSALICKINYEVANMNPIPWFSKSMLLPVSALKFGDMLTLKQIEKYAGLSRNEEIFNDKVQPVWHTLNDIICKEVTQSLQQPSVHAELLAIYHGLKIARDKGIGRLICESDSKLITGEINMFHQYFPTITLIHLSKQMDWEVTFVHVYREGNKCADWLAKTENSSQQDLIIHSARPYTKLTLVMPWVSQPK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00227 663 PANTHER PROTEIN BASIC PENTACYSTEINE6 146 464 - -
Gma06g00227 663 MobiDBLite consensus disorder prediction 1 36 - -
Gma06g00227 663 SUPERFAMILY Ribonuclease H-like 553 635 IPR012337 -
Gma06g00227 663 SMART GAGA_bind_2 146 465 IPR010409 -
Gma06g00227 663 Pfam Reverse transcriptase-like 547 632 IPR002156 GO:0003676|GO:0004523
Gma06g00227 663 Gene3D - 534 635 IPR036397 GO:0003676
Gma06g00227 663 CDD RNase_H_like 553 632 IPR044730 -
Gma06g00227 663 Pfam GAGA binding protein-like family 146 464 IPR010409 -
Gma06g00227 663 PANTHER - 146 464 IPR010409 -
Gma06g00227 663 MobiDBLite consensus disorder prediction 304 320 - -
Gma06g00227 663 MobiDBLite consensus disorder prediction 291 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00227 Gma-Chr6 2038854 2047760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00227 211 469 BBR or BPC Transcription factor family AT5G42520 59.567 5.07e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gma06g00227 GAGA_bind 5.7e-92 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00227 - - gmx:100809369 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00227 06 2038854 2047760 Gma06g00227 06 2038854 2047760 ECH
Gma04g00248 04 2155016 2156178 Gma06g00227 06 2038854 2047760 GST