Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00216 ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGAAATGAGTAG 1281 0.4114 MVYVREAQKGAQKVRPKRKRKGRGGVCIRTELTAFFALVLAATPYQTFTFTSLFSFLLLYITVLLFHTQTLSLVSSISLQIHSPFPNMSQRYDNNVFKSHINNIQLAPGITETLHLPPPLQTEPTIRGKQNGKSKGPRNAKSANADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPQELEDQVNSLKAEVDSLYAEESELDDCIRKKQELLRNLEESESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASCIEVPDPDEELGFRQRQYKMIVRSAIGPINLYLLSKDDSKFEDDSAKRMKLMDPSWNSDPIRKRGVGLLESQHDEKNPSEHFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELWGNE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00216 426 Gene3D - 152 224 IPR036388 -
Gma06g00216 426 PANTHER TRANSCRIPTION FACTOR E2F 46 426 IPR015633 GO:0000978|GO:0006357
Gma06g00216 426 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g00216 426 SUPERFAMILY "Winged helix" DNA-binding domain 157 220 IPR036390 -
Gma06g00216 426 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Gma06g00216 426 CDD E2F_DD 233 340 IPR032198 GO:0046983
Gma06g00216 426 PANTHER TRANSCRIPTION FACTOR E2FC 46 426 - -
Gma06g00216 426 Coils Coil 252 272 - -
Gma06g00216 426 MobiDBLite consensus disorder prediction 117 152 - -
Gma06g00216 426 Pfam E2F transcription factor CC-MB domain 238 337 IPR032198 GO:0046983
Gma06g00216 426 SUPERFAMILY E2F-DP heterodimerization region 233 340 IPR037241 -
Gma06g00216 426 MobiDBLite consensus disorder prediction 135 152 - -
Gma06g00216 426 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Gma06g00216 426 Gene3D - 229 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00216 Gma-Chr6 1896506 1900247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00216 155 425 E2F-DP Transcription Factor Family AT1G47870 54.909 1.26e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma06g00216 E2F_CC-MB 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00216 K06620 - gmx:100797301 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00216 06 1896506 1900247 Gma06g00216 06 1896506 1900247 ECH
Gma04g00234 04 1995996 2004017 Gma06g00216 06 1896506 1900247 GST