Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00189 ATGACTCAAGATCTAGAGATGAAGGATCGCTCAACGCCTTCCAACTCCGTTTCTTCGCCTGCTCCATCTACTCTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGATCATGTTCTCACTCCTGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGATGATGATCATGAGATGGAAGTGGACGCTGCAACATCTGCGATTCAAACCCCAGCCAAACACTTGTTGCCCGAGCTAGAAATCTACTGTTACCTGCTTGTACTCCTTTTTCTGATTGATCAGAAAAAATACAGTGAGGCCAAAGCTTGTTCCTCAGCTAGCATTGTTTGGCTGAAGAACATAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAACTTATGGGAGATCTTGCTGAAATTCGGGGCAACCTTCTTGCATTGCACCGAATTGCCACCCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCGAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTAGGGAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCACGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTCTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCGGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAGTCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTAGCCTTTAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCACTTCGATTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTCTGA 1464 0.4501 MTQDLEMKDRSTPSNSVSSPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDHVLTPGSEVHAKLSAYLPKDDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYSEAKACSSASIVWLKNINRRTVDVIASRLYFYYSYSYELMGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00189 487 Coils Coil 454 481 - -
Gma06g00189 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Gma06g00189 487 Gene3D - 242 441 - -
Gma06g00189 487 SMART PINT_4 345 438 IPR000717 -
Gma06g00189 487 Pfam PCI domain 311 416 IPR000717 -
Gma06g00189 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Gma06g00189 487 MobiDBLite consensus disorder prediction 1 23 - -
Gma06g00189 487 MobiDBLite consensus disorder prediction 452 487 - -
Gma06g00189 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Gma06g00189 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 487 - -
Gma06g00189 487 MobiDBLite consensus disorder prediction 452 480 - -
Gma06g00189 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Gma06g00189 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00189 Gma-Chr6 1655488 1658963 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00189 K03033 - gmx:100814379 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00189 06 1655488 1658963 Gma06g00189 06 1655488 1658963 ECH
Gma04g00201 04 1723532 1726452 Gma06g00189 06 1655488 1658963 GST
Gma17g02486 17 42898576 42903804 Gma06g00189 06 1655488 1658963 PCT
Gma14g02160 14 52738780 52744119 Gma06g00189 06 1655488 1658963 PCT
Gma06g00189 06 1655488 1658963 Gma17g02486 17 42898576 42903804 PCT
Gma06g00189 06 1655488 1658963 Gma14g02160 14 52738780 52744119 PCT