Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00188 ATGCTCGATTCGGTTCTTCTGGCGCTTTTCTTGCCGTGCCTTGGCATGAGCGGGGTTTTTATCGTCTACATGTGCCTTCTATGGTACGCCACTACCCGCCGCAACCAACCCCCCATTGACGGTCAACCGGTGAAGCCCGTAACTGATAAGGGTCTATCCGCTTTGGAGTTGGAGAAGCTTCCAAAAATCACCGGCAAAGAACTCGTCTTGGGCACCGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTAGAGTGGTCCCCGGTTGCAACCATGGATTTCATGTCCAATGCGCTGACACCTGGCTCTCTAAGCACCCTATTTGCCCCGTTTGTAGGACCAAGCTGGACCCGCAAATCTTCACTTCCCAAAGCCCCTGCTGA 393 0.5522 MLDSVLLALFLPCLGMSGVFIVYMCLLWYATTRRNQPPIDGQPVKPVTDKGLSALELEKLPKITGKELVLGTECAVCLDEIESEQPARVVPGCNHGFHVQCADTWLSKHPICPVCRTKLDPQIFTSQSPC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00188 130 SUPERFAMILY RING/U-box 73 122 - -
Gma06g00188 130 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Gma06g00188 130 Pfam Ring finger domain 73 116 IPR001841 -
Gma06g00188 130 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 127 - -
Gma06g00188 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 127 - -
Gma06g00188 130 SMART ring_2 74 115 IPR001841 -
Gma06g00188 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00188 Gma-Chr6 1643408 1643800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00188 1 130 C3H Transcription Factor Family AT5G42200 58.824 2.69e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00188 K19037 - gmx:100811160 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00188 06 1643408 1643800 Gma06g00188 06 1643408 1643800 ECH
Gma04g00199 04 1703267 1704416 Gma06g00188 06 1643408 1643800 GST
Gma17g02488 17 42910480 42911001 Gma06g00188 06 1643408 1643800 PCT
Gma14g02162 14 52765941 52767120 Gma06g00188 06 1643408 1643800 PCT
Gma06g00188 06 1643408 1643800 Gma17g02488 17 42910480 42911001 PCT
Gma06g00188 06 1643408 1643800 Gma14g02162 14 52765941 52767120 PCT