Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00179 ATGCCTCACAATCCTGACACCGTGGTCTACCTCCACGGCACCCTCGATTTGGTAATCGAGGATGCTCGGTTCCTTCCGAACATGGACATGCTCTCCGAGCGCGTGCGAAGGTTCTTCTCTGCTCTTAACACCTGCAGCGCCTCCATCACCGGGAAAAGGAAGCAACGACATGCCCGCCACCGCCACCGCAAAATCATCACCAGCGATCCTTACGTGACCGTCTGCCTCGCCGGCGCCACCGTTGCGCGCACCCGCGTGATCTCGAACTCGCAGAACCCGACGTGGGACGAGCACTTCAAGATCCCACTCGCTCACCCGGCCTCGCAGGTCGAGTTCTACGTCAAGGACAATGACATGTTCGGCGCCGACCTGATCGGAGTCGCCACCGTCTCAGCCGAGAGGATCCTCTCCGGCGAAGCCATCCGCGACTGGTTTCCGATCATAGGAACGTTCGGGAAGCCGCCGAAGCCTGACTGCGCGGTGCGCCTGGCGATGAAATTCACGAGGTGCGAGGACAGTTTTATGTACCGGTCCCGCACCGAAACGGATCCGGACCGGTTCGTTGTTCGGGACTCGTATTTTCCGGTTCGGCACGGAGGATCGGTGACGCTGTATCAGGACGCGCACGTGCCTGATTCGATGTTGCCGGAGGTTGAGTTAGAGGACGGGGTTGTGTTTGAGCACGGGAAGTGCTGGGAAGATATATGTCACGCGATATTGGGAGCGCATCATTTGGTTTACATTGTGGGTTGGTCCATCTACCACAAGGTGAAGCTGGTCAGAGAGCCTACAAAAGCCTTACCTAGCGGTGGGAACTTGAATCTCGGGGAGTTGCTCAAGTACAAGTCGCAAGAAGGTTTGCGAGTTTTACTATTGGTTTGGGATGATAAGACTTCGCACAGCAAGTTTGGCATCAACACGAGTGGAGTAATGCAAACGCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCATCAGTTAGATGTTTGCTGTCACCAAGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTTGGCACTCTCTTTACACATCATCAGAAATGTGTGATAGTGGATACTCAAGCACACGGTAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCCGAGCATAGAATTTTACGTGATATCGACACTGTTTATCAGGACGATTATCATAATCCCACGTTTTGTGCGGGAACCAAGGGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCACCAAATGGTCTGAGTTGGGTCGGAAACTCAAGAGAGTATCTCACTGGAACGATGATTCTTTGATCAAGTTAGAACGCATCTTTTGGATTCTTAGTCCTTCGGAATCAACTCCAGTTGATGATCCTGAACTATGGGTTTCGAAGGAAGACGATCCTGAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGTTCTTTGAAAGGATTCCCTAAGGATGTAGTTGTTGCCGAGACTCAGaaccttgtttgtgcaaaaaatttggtcatagacaagagtattcaaacagcatatatacatgcgatcagatctgctcaacattttatttatatcgagaatcaatattttattggatcatcCTTTGCTTGGCCAGCTTACAAAGAAGCAGgtgctgataacctaattcctgtggagttggcactgaagatagtcagtaagataagatcgaaggagagattcacagtttatattgtcatcccaatgtggcctgaaggttccccttcttctacttcagtgcaagagatactcttttggcagGGACaaacaatgaaaatgatgtatgaaatcatagctctggagttaaaatctatgcagcttgatagtcatccacaagattacctcaatttttactgtcttggaaaccgagagCAGTTGACAACTGAAGTTTCAAGTTCAAGTAATTCACCTTCAGATAATGGCGAAACGGTTTCAGCCTCACAAAAGTTCcgacggtttatgatttatgtacatgccaaaggaatgattgtggatgatgaatatgtaattcttgggtctgccaatataaatcaacgatctttggctggatccagagatactgagatagcaatgggtgcacatcaaccgcatcatacatggAGTCAGAAAAAGAGGCATCCACATGGTCAGGTATATGGGTATAGAATGTCTTTGTGGGCAGAACACATGGAAACCATAGAAGCTTGCTTCAAGGAGCCTGAAAGCTTGGAGTGTGTGAAAAGTGTGAACAAGATTGCTGAAGACAACTGGAAGAAGTACACAGCTGATGACTATACTCCATTGCAAGGGCACATAATGAAGTATCCCGTGTGTGTAAATGCCTATGGGAAGGTAAAGTCCTTAACTGGATTTGAGTCTTTCCCAGATGTTGGTGGCAAGGTGCTTGGCTCCCGGTCTACCCTTCCTGACGCTCTAACTACATAG 2544 0.3923 MPHNPDTVVYLHGTLDLVIEDARFLPNMDMLSERVRRFFSALNTCSASITGKRKQRHARHRHRKIITSDPYVTVCLAGATVARTRVISNSQNPTWDEHFKIPLAHPASQVEFYVKDNDMFGADLIGVATVSAERILSGEAIRDWFPIIGTFGKPPKPDCAVRLAMKFTRCEDSFMYRSRTETDPDRFVVRDSYFPVRHGGSVTLYQDAHVPDSMLPEVELEDGVVFEHGKCWEDICHAILGAHHLVYIVGWSIYHKVKLVREPTKALPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFGINTSGVMQTHDEETRKFFKHSSVRCLLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRILRDIDTVYQDDYHNPTFCAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWRKATKWSELGRKLKRVSHWNDDSLIKLERIFWILSPSESTPVDDPELWVSKEDDPENWHVQVFRSIDSGSLKGFPKDVVVAETQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPAYKEAGADNLIPVELALKIVSKIRSKERFTVYIVIPMWPEGSPSSTSVQEILFWQGQTMKMMYEIIALELKSMQLDSHPQDYLNFYCLGNREQLTTEVSSSSNSPSDNGETVSASQKFRRFMIYVHAKGMIVDDEYVILGSANINQRSLAGSRDTEIAMGAHQPHHTWSQKKRHPHGQVYGYRMSLWAEHMETIEACFKEPESLECVKSVNKIAEDNWKKYTADDYTPLQGHIMKYPVCVNAYGKVKSLTGFESFPDVGGKVLGSRSTLPDALTT 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00179 847 CDD C2_plant_PLD 8 168 - -
Gma06g00179 847 Gene3D C2 domain 11 175 IPR035892 -
Gma06g00179 847 PANTHER PHOSPHOLIPASE D 6 846 IPR015679 -
Gma06g00179 847 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Gma06g00179 847 Pfam Phospholipase D C terminal 768 837 IPR024632 -
Gma06g00179 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Gma06g00179 847 SMART pld_4 693 720 IPR001736 GO:0003824
Gma06g00179 847 SMART pld_4 350 385 IPR001736 GO:0003824
Gma06g00179 847 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824
Gma06g00179 847 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Gma06g00179 847 SUPERFAMILY Phospholipase D/nuclease 539 768 - -
Gma06g00179 847 Pfam C2 domain 13 147 IPR000008 -
Gma06g00179 847 PIRSF PLD_plant 3 847 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gma06g00179 847 Pfam PLD-like domain 547 729 IPR025202 -
Gma06g00179 847 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 150 IPR035892 -
Gma06g00179 847 PANTHER PHOSPHOLIPASE D 6 846 - -
Gma06g00179 847 SUPERFAMILY Phospholipase D/nuclease 185 455 - -
Gma06g00179 847 Gene3D Endonuclease Chain A 225 468 - -
Gma06g00179 847 SMART C2_3c 14 144 IPR000008 -
Gma06g00179 847 Gene3D Endonuclease Chain A 517 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00179 Gma-Chr6 1571855 1579257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00179 6 676 Phospholipase D Gene Family (Wang group) AT4G35790 65.988 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00179 K01115 - gmx:100789389 1732.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00179 06 1571855 1579257 Gma06g00179 06 1571855 1579257 ECH
Gma04g00191 04 1633897 1640422 Gma06g00179 06 1571855 1579257 GST