Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00173 ATGCCGCTCAAGTTGGCGGGAGTAGCCACTGTCGGTTCCCTTCTTCTATGTGTTGCTATTTCTCTCTTTCACATCGCTGGGGCCGAAGATCCCTACCGCTTCTTCAACTGGAATATTACTTATGGTGATATTTACCCTCTTGGTGTTCGCCAAACGGGAATATTGATCAACGGGCAATTCCCAGGTCCAGATATTCATTCTGTTACCAACGACAACCTCATCATCAATGTCTTCAACAGTTTAGATGAGCCTTTTCTCCTCTCCTGGAATGGGATCCAGCAGAGAAGGAACTCGTTCGAAGATGGTGTTTTTGGAACAACATGCCCCATTCCAGCAGGGAAGAATTTCACTTACATCCTTCAAGTCAAAGATCAAATTGGGACCTTTTACTACTTCCCATCCCTTGCATTCCACAAAGCCGCTGGCGGTTTTGGAGGCATTAGAATCCTTAGCAGGCCAAGAATTCCAGTCCCATTCCCTGATCCAGCTGGTGATTACACTGTCCTCATTGGAGaTTGGTACAAGTCCAACCACACGACTTTGAAAGCCCGTCTTGATAGGGGCAAGAAGCTGCCTTTTCCCGATGGAATCCTTATCAATGGTCGCGGACCTAATGGAGTGTCTTTCAACGTTGAACAAGgaaagacttataggcttagaatatcaaacgtggggctgcaacactcccttaactttagaatccagaaccacaaaatgaagctggtagaagtggaaggaacgcacacccttcagaccatgtactcctctcttgacgttcatgtagggcaatcttattcggtgctggtaactgcagaccaacctgctcaagactattacattgtggtttcCACACGATTCTCCTACAAGGTCCTCACCACCACTGGAGTGCTTCGCTATAGCAACTCCGCAGGCCCAGTATCAGGCCCACCCCCTGGTGGACCTACAATCCAAATTGATTGGTCTTTGAACCAGGCCCGCTCAATTCGGACAAACCTTACAGCAAGTGGACCGAGGCCAAACCCGCAAGGATCGTACCATTACGGTATGATAAACACGACGAAGACGATCATACTGGCGAGTTCCGCTGGTCAAGTAAATGGGAAACAAAGATACGCAATTAACAGCGTGTCTTATGTTGTCCCAGACACCCCTCTTAAGCTCGCCGATTACTTCAAAATCTCCGGTGTTTTCCGCCCCGGAAGCATATCTGACAGACCCACTGGCGGCGGCATTTACCTTGACACATCTGTGTTACAAGCTGACTACAGAAATTTTGTCGAGATTGTCTTCCAAAACAACGAGAACATCGTTCAGAGCTACCATCTTGATGGCTACTCTTTCTTTGTCGTTGGTATGGATGGGGGACAATGGACAACTGCTAGCAGGAACCAGTACAATCTCCGAGATGCAGTTGCACGTTGCACCACACAGGTATACCCCTTTTCATGGACTGCTATTTATATTGCCCTTGACAATGTGGGAATGTGGAACTTGAGGTCTGAGTTTTGGGCACGACAATACCTTGGGCAACAGTTATATTTGCGCGTTTATACAACATCAACCTCAATCAGAGACGAGTTCCCTGTTCCAAAGAATGCAATTCTTTGTGGTAGGGCAAGTGGGAGACACACGCGACCCCTTTGA 1644 0.4173 MPLKLAGVATVGSLLLCVAISLFHIAGAEDPYRFFNWNITYGDIYPLGVRQTGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQQRRNSFEDGVFGTTCPIPAGKNFTYILQVKDQIGTFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTTLKARLDRGKKLPFPDGILINGRGPNGVSFNVEQGKTYRLRISNVGLQHSLNFRIQNHKMKLVEVEGTHTLQTMYSSLDVHVGQSYSVLVTADQPAQDYYIVVSTRFSYKVLTTTGVLRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINTTKTIILASSAGQVNGKQRYAINSVSYVVPDTPLKLADYFKISGVFRPGSISDRPTGGGIYLDTSVLQADYRNFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTTASRNQYNLRDAVARCTTQVYPFSWTAIYIALDNVGMWNLRSEFWARQYLGQQLYLRVYTTSTSIRDEFPVPKNAILCGRASGRHTRPL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00173 547 Gene3D - 32 153 IPR008972 -
Gma06g00173 547 SUPERFAMILY Cupredoxins 28 179 IPR008972 -
Gma06g00173 547 PANTHER MULTI-COPPER OXIDASE-LIKE PROTEIN 11 540 - -
Gma06g00173 547 Pfam Multicopper oxidase 165 301 IPR001117 -
Gma06g00173 547 SUPERFAMILY Cupredoxins 159 339 IPR008972 -
Gma06g00173 547 SUPERFAMILY Cupredoxins 349 538 IPR008972 -
Gma06g00173 547 CDD CuRO_2_AAO_like_1 164 299 IPR034271 -
Gma06g00173 547 PANTHER MULTI-COPPER OXIDASE 11 540 IPR045087 -
Gma06g00173 547 Pfam Multicopper oxidase 383 519 IPR011706 GO:0005507|GO:0016491
Gma06g00173 547 Gene3D - 348 543 IPR008972 -
Gma06g00173 547 CDD CuRO_3_AAO_like_1 381 501 IPR034275 GO:0005507
Gma06g00173 547 Pfam Multicopper oxidase 39 152 IPR011707 GO:0005507
Gma06g00173 547 CDD CuRO_1_AAO_like_1 34 149 IPR034273 GO:0005507
Gma06g00173 547 Gene3D - 163 338 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00173 Gma-Chr6 1517343 1524607 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00173 - - gmx:100776222 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00173 06 1517343 1524607 Gma06g00173 06 1517343 1524607 ECH
Gma04g00183 04 1554614 1562708 Gma06g00173 06 1517343 1524607 GST
Gma17g02496 17 42969381 42976097 Gma06g00173 06 1517343 1524607 PCT
Gma14g02179 14 52910312 52915517 Gma06g00173 06 1517343 1524607 PCT
Gma06g00173 06 1517343 1524607 Gma17g02496 17 42969381 42976097 PCT
Gma06g00173 06 1517343 1524607 Gma14g02179 14 52910312 52915517 PCT