Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00169 ATGGCCTTCGCCACCAGCGCCTTGGTTTGTTCAAACTTGCTCGGAAGGAAGGTTCTAGTCACAAGCAAATCATCCACTCCACTACCATTTCTTTTCAAGAGAAGCATCTTAAAAGCTCAGAATTCAGAGCAAGTCAAATCCGCATCTTCACGGGCTGCTCTAGCTGCACTTATCGTCTCCTCCGCGAGCCTCTCTGTGACCCCAGAAGCCCTAGCCGCTGATAACTTGACCCCTCCCCCCGTGATTGAAGCGCAACAGAGCCAACCCTCATCCCCTTTCTCACAGAACCTCCTCCTCACTGCGCCTAAGCCCCAATCCTCTTCCGACCTCCCCGAAGGCACCAATTGGCGCTACAGCGACTTCTTAAACGCCGTCAAGAAGGGTAAGGTCGAGCGAGTCAGGTTCAGCAAAGACGGTTCTGCCCTCCAACTAACCGCGGTTGACGGCCGTCGCGCCTCCGTTATTGTCCCCAATGACCCGGACCTCATCGACATCCTCGCCATGAACGGCGTCGACATTTCCGTCGCGGAAGGCGAATCCCCCAACAGCTTGTTCAACATCGTTGGCAACTTGCTCTTCCCCTTGCTCGCGTTCGCGGGTTTGTTCTTCCTCTTCCGGAGAGCTCAAGGCGGGCCCGGTGGGCCTGGCGGGATGGGTGGGCCCATGGACTTTGGACGGAACAAGTCCAAGTTCCAGGAAGTCCCCGAAACCGGTGTGAGCTTCGCTGACGTTGCGGGCGCGGACCAAGCGAAGCTTGAGCTCCAAGAGGTTGTTGATTTCTTGAAGAATCCCGATAAGTACACCGCGTTGGGCGCGAAGATTCCGAAGGGGTGTCTTTTGGTGGGGCCACCGGGAACCGGAAAGACCCTTCTGGCGAGGGCGGTGGCGGGAGAAGCTGGGGTGCCGTTTTTCTCGTGCGCGGCTTCGGAGTTCGTGGAGCTTTTCGTGGGGGTTGGTGCTTCGAGGGTGAGGGATTTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTAGGAGGTGGAAATGATGAGAGGGAACAAACTATTAATCAGCTTCTTACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGATTCGGCGTTGTTGAGGCCTGGCCGGTTCGATAGGCAAGTTACTGTGGATAGACCTGATGTTGCCGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCGCTTGCAAAGGATGTTGATTTTGAAAAAATTGCTAGGAGAACCCCTGGATTCACTGGGGCTGATCTGCAGAATTTGATGAATGAGGCGGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCCGAGAAGAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGACCCTGTAGCCAAGATATCAATTATTCCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGTTACCTTGAAAATCAGATGGCTGTTGCCTTGGGTGGAAGGGTTGCCGAAGAGGTTATTTTTGGCCAGGAAAATGTCACCACCGGAGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGATTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTCTTGGGTCAACAGATGTCATCGCAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCGGAAGTGAGGGAACTGGTAGAGAGAGCATATTCTAGGGCAACACATATTATCACAACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCTGAATTATATGTTGCATAA 2091 0.5103 MAFATSALVCSNLLGRKVLVTSKSSTPLPFLFKRSILKAQNSEQVKSASSRAALAALIVSSASLSVTPEALAADNLTPPPVIEAQQSQPSSPFSQNLLLTAPKPQSSSDLPEGTNWRYSDFLNAVKKGKVERVRFSKDGSALQLTAVDGRRASVIVPNDPDLIDILAMNGVDISVAEGESPNSLFNIVGNLLFPLLAFAGLFFLFRRAQGGPGGPGGMGGPMDFGRNKSKFQEVPETGVSFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKGKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYSRATHIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00169 696 Gene3D - 111 185 - -
Gma06g00169 696 Gene3D - 229 411 IPR027417 -
Gma06g00169 696 SUPERFAMILY FtsH protease domain-like 492 686 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma06g00169 696 ProSitePatterns AAA-protein family signature. 381 399 IPR003960 GO:0005524|GO:0016887
Gma06g00169 696 Gene3D - 412 487 - -
Gma06g00169 696 PANTHER METALLOPROTEASE M41 FTSH 46 688 - -
Gma06g00169 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 482 IPR027417 -
Gma06g00169 696 Pfam Peptidase family M41 492 685 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma06g00169 696 Pfam AAA+ lid domain 433 476 IPR041569 -
Gma06g00169 696 MobiDBLite consensus disorder prediction 80 112 - -
Gma06g00169 696 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 46 688 - -
Gma06g00169 696 Pfam ATPase family associated with various cellular activities (AAA) 279 410 IPR003959 GO:0005524|GO:0016887
Gma06g00169 696 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 696 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gma06g00169 696 SMART AAA_5 274 413 IPR003593 -
Gma06g00169 696 CDD AAA 245 410 - -
Gma06g00169 696 Gene3D Peptidase M41 488 691 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma06g00169 696 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 184 685 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00169 Gma-Chr6 1494661 1498747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00169 234 687 Miscellaneous Gene Families AT5G53170 49.561 1.45e-135 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00169 K03798 - gmx:100807408 1263.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00169 06 1494661 1498747 Gma06g00169 06 1494661 1498747 ECH
Gma04g00178 04 1528153 1531984 Gma06g00169 06 1494661 1498747 GST
Gma14g02186 14 53011023 53013397 Gma06g00169 06 1494661 1498747 PCT