Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00138 ATGAATTTGTTCCTGGTTGTTTGTTGGGTGGTGTATTGCTTGGGAGTATCATCGGTAACTCCTTTTGTGGCGGCTGCAAATGTGTCATCCTCAAGGCCCGCCGTTGTGCACATTGGAGCAATCTTCAACATCGATTCTGTTCTTGGGAAAGTCGCTAAAATTACATTGGAGGAGGCCGTCAAAGATGTCAACGCCGACAAAACCATTCTACATGGAACTCAACTTGTTCTCACGATGCAAAATTCCAATCACAGTGGTTTCATAGGCATGGTTCAAGctttgcggttcatggagactgatgtgattgctataatagggccacaatcttctgtgactgcccacataatatcccatgttgcaaatgaactccgggttcctttagtgtcatttgccgctacagaccccaccctctcatcgctgcagttccctttctttgtgaggacaacacagagtgatttgtaccaaatgaaggcagttgctgagattattgattattatggttggaaggaggtgattgccatatatgtggatgatgattatgggcgaaatggtgtggccgcattggatgacgaactagctgcaaggcgttgtagaatctctttcaaagaaggaattaaatcaggaactgaagttgaccggggtgaaattactagtttacttgtgaaagtggcactgatgcaatctcgcgtcattgttctccatgcacaaactgattctggatttatggttttcaatttggcacgttatcttgggatgacaggcaatggctatgtgtggatagtcacagactggctctcttcttttctggattcctcttatctcccttcagagacaatggatgttctccaaggagtgcttgttttgcgccatcatacacctgattcggatagaaaaagggcatttctctctaggtggaagaagttaactggtggctctttggggttacattcttatggcctctatgcttacgattctgttttgctggttgcacgggctattgatGCTTTTTTCAGTCAGGGTGGGATTGTTTCGTTTACCAATTacacaagtttaggtggtgataagggaggtggtcttaaccttgatgtaatgagcatttttgacaatggaacgcttctgttgaagaacatattgcagagtgattttgttggactatcaggtcgaatgaaatttgaaccagaccggtctcttgttcatcctgcctatgaagtccttaatgtggttggaaatggccttaggagggttggttactggtccaactattctggtctgtcaattgtgactcctgagatattgtatgcaaaaccacctaatagatcaagtgcaaatcagaaactatacagtgtgatatggcctggagaaacattatctaaacctcgtgggtgggtcttcccaaacaatggtagacaattgagaattggtgtgcctatccgagtcagttaccgtgaatttgtggcaccggtgcagggaacagagatgtttaaaggtttctgtgttgatgtattcacagcagctgtaaacttgttgccttatgctgttccttaccgttttgtcccatttggagatggccacaaaaatccaagctacacacagcttgtcaacttaatcacaactggttactttgatggtgccattggtgacattgctattgtcacaaatcggacaaggattgtagattttacacagccatatgctgcatctggacttgttgtggtggcccctttcaagaagatcaattctggtggttggtctttcttgcagccatttactcctcttatgtggattgtgactgcttgtttcttccttttcattgggatagttatatggattctggaacacaggataaatgatgagttcaggggtccacctaggcagcaaattataaccatgttgtggtttagcctatcaactctgtttttttcccacagagagaataccatgagttctcttggtcggttggtgatgctcatatggttatttgtggttttgatcctcacttccagctacactgcaagtttaacatccatactcacagtgcagcagttatattctcctatcagtggaatagagagcttaaaagctagtgatgagcctatagggttccaagtgggttcatttgcagaacattacatgactcaagatttaggaatagccaaatcgaggcttattccccttggatccccagaagaatatgctaatgcactccagcttggtcctaaaagaggaggtgttgctgctattgttgatgaacgaccctatgtcgaaatcttcttatcaagccagtgcacattcaggattgtaggtcaggagttcaccagaagtggctggggttttGCATTCCCTAGGGACTCTCCTTTGGCTGTAGATATGTCAACTGCCATTTTACAACTTTCTGAAACTGGTGATCTACAGCGGATTCATGATAAGTGGATGACACGAAGCTCTTGTAGTTTAGAGAATGCTGAAATTGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTGCGGGATAGCTTGCTTTATTGCTCTTGTTTTGCATTTTTTGCAGCTTATGTTCCAGTTACGGCAATCTCCTCCTTCTGAACCTGCTTCTAGTGCTAGCTCAATTTCTGGTCGTTTTCATAGATTTCTTACACTCATTGATGAGAAGGAAGATCCATCCAAAAGAAAAGGAAGAAAGAGGAATGGAGATGAAAGATCGCTTGAAGATCAATTGGGAAGGCAGCCAAAGAGGGTACAGATACAGACAGAAATAACAGCCAACTCAAACAATTAA 2790 0.1172 MNLFLVVCWVVYCLGVSSVTPFVAAANVSSSRPAVVHIGAIFNIDSVLGKVAKITLEEAVKDVNADKTILHGTQLVLTMQNSNHSGFIGMVQALRFMETDVIAIIGPQSSVTAHIISHVANELRVPLVSFAATDPTLSSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGIKSGTEVDRGEITSLLVKVALMQSRVIVLHAQTDSGFMVFNLARYLGMTGNGYVWIVTDWLSSFLDSSYLPSETMDVLQGVLVLRHHTPDSDRKRAFLSRWKKLTGGSLGLHSYGLYAYDSVLLVARAIDAFFSQGGIVSFTNYTSLGGDKGGGLNLDVMSIFDNGTLLLKNILQSDFVGLSGRMKFEPDRSLVHPAYEVLNVVGNGLRRVGYWSNYSGLSIVTPEILYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVAPVQGTEMFKGFCVDVFTAAVNLLPYAVPYRFVPFGDGHKNPSYTQLVNLITTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITMLWFSLSTLFFSHRENTMSSLGRLVMLIWLFVVLILTSSYTASLTSILTVQQLYSPISGIESLKASDEPIGFQVGSFAEHYMTQDLGIAKSRLIPLGSPEEYANALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLENAEIDSDRLQLKSFWGLFLICGIACFIALVLHFLQLMFQLRQSPPSEPASSASSISGRFHRFLTLIDEKEDPSKRKGRKRNGDERSLEDQLGRQPKRVQIQTEITANSNN 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00138 929 Gene3D - 151 424 - -
Gma06g00138 929 Gene3D - 581 713 - -
Gma06g00138 929 SUPERFAMILY Periplasmic binding protein-like II 447 813 - -
Gma06g00138 929 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Gma06g00138 929 CDD GluR_Plant 469 810 - -
Gma06g00138 929 Pfam Bacterial extracellular solute-binding proteins, family 3 493 812 IPR001638 -
Gma06g00138 929 MobiDBLite consensus disorder prediction 914 929 - -
Gma06g00138 929 MobiDBLite consensus disorder prediction 885 929 - -
Gma06g00138 929 PANTHER GLUTAMATE RECEPTOR 3.3 23 922 - -
Gma06g00138 929 SUPERFAMILY Periplasmic binding protein-like I 31 427 IPR028082 -
Gma06g00138 929 Gene3D - 760 818 - -
Gma06g00138 929 PRINTS Metabotropic glutamate GPCR signature 104 130 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gma06g00138 929 PRINTS Metabotropic glutamate GPCR signature 136 155 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gma06g00138 929 PRINTS Metabotropic glutamate GPCR signature 155 171 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gma06g00138 929 PRINTS Metabotropic glutamate GPCR signature 171 188 IPR000337 GO:0004930|GO:0007186|GO:0016021
Gma06g00138 929 Gene3D - 55 399 - -
Gma06g00138 929 SMART GluR_14 472 813 IPR001320 GO:0015276|GO:0016020
Gma06g00138 929 PIRSF IGluLR_plant 3 929 IPR017103 -
Gma06g00138 929 Gene3D - 466 580 - -
Gma06g00138 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 922 - -
Gma06g00138 929 MobiDBLite consensus disorder prediction 885 911 - -
Gma06g00138 929 CDD PBP1_GABAb_receptor_plant 37 427 IPR044440 -
Gma06g00138 929 Pfam Receptor family ligand binding region 57 409 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00138 Gma-Chr6 1209064 1213642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00138 30 916 Ion Channels AT1G42540 64.588 0.0 1253
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00138 06 1209064 1213642 Gma06g00138 06 1209064 1213642 ECH
Gma04g00146 04 1238460 1242645 Gma06g00138 06 1209064 1213642 GST