Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00070 ATGGACGTCGAAAACGAGGAAGCTCCACTCCAACAACACTCTGATTCACAATGCCACACCGACCTGCCAAATCTCCCCTACGCCTCTGCCGTTGACCTTGAAGAGGCGGCGGCAACGACGACGGAGGCTGTGGCGGTTGAACCCGATGCGCTGGCGGTGTCCGACGATGGCGCCGAAACGCAAGTGACGGACGTAGCGGGTGACGAGATGATTGAGGAGAAGGCGAACGAAGGAATTGATGTGGATGACGTGGCTTTGGAGACGGATATGGTGGAAGAGGAACCGAATTTGGCAATTGATGCCGAAGACGACGAAATTGAGGACAGGAACACAAATGAAGACGCTTTGATGGAAGACGAACAACAACAAGAAGGAGAGGACGTAGAGCAAGAAGGAgagggggaggaagaagaacaacaacaagtagatgaggaggaagaaggagaacagcaacaagaagatgaggaagaagaaggagaagaagaagaagcagcagcagcagcagcagcagaagaagaagaagaagaagaagaagaagaagaagagaagcaaggagaagaagaagaTGGTGGAATGGCAATGACAGAAGACACAGAGAAGTCGGAGAAGAGTGCCGCTGTGAGTGGCGGGAAGAGGAGGCGTGGCGCTGGGAAGAATGCTAAGGCTACAGGGAGAGTTGCATCAAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCATCTTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGGTGCATCAAAGACACTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACCGTAATGTTAATTGAACAGAATGAACAGGGAAACAATGTGGGACAAATAGATTTTGATGACAGAAACAGCTGGGAGTATCTCTTCAAGGACTATTACATAGATATAAAAGAAAAACTATCTCTCACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAAGAATCACCGGATGAAATTTTTGATGCCACTAATGACAGAGGATCAGATTCAGATAGCTCCTATGAGAATGCAGATTTGAGTCGTTCTAAAAGAAAAAAGGCCAAGAAACGGGGGAAGTCCCGTTCCAAAGGAGATGACAGCTCAGAGTGGGCTTCAACAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGACAAATCTGTTTTATCTCAGTTTGATGTGCATACTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAAAGTGGGACATTTTGAAACGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGATGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATGAGTCATTTGGAAGGTGATGGCAATCCCAATTCACATACGAAAGCTGGCAAAGATAAGAGACGAAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAACTTGGTGGAAGATCTTCTTGAAGATACAGAGAAGTTCCATGATAAAGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGAAATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTTTCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGAAGCTAGAGTAAAAGATTGGCTAGAAACAGAGACAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGCAGGTTGGAGGAAATTCCAGAAATACACGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGCAAATGAAGTGGATGATAAAAGACAAGAAAACTACATGAGACCAAGAGGGTCTACTGCATTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCTTGGAGTGGAACAAGGAATTATTCTAATGTGAATCATGAACTCGGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTAACGAGGCACTAAATGATGCTCAATTGCATCGGGGAAGAGATCGGGAATCACAACTATCTAATAGCTGGGAGAGGCAAAAGCTATCTTCAACCTTGGAAAGTGGCGCTAAAAATACCCAACCATTGGTAGCATCTGAGTCTTTTTCTTCTGCTGTATCAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTCCAGCTGTGAAAATAAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAACTACACAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCCTAACAGATGCCTTGGCAGGGAATTTTTCTAAGGAACCATCAATAGTGGATAAAGCTCAATTGGTGTATGATTTACATTACCCATCCTCATACTCTAGGAAGTCTCCACAACAAGGTATAGAAGTTCAAGCTGGAGAAAGACTGTCATTAGATCAAAATTGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACAACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCTAATAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGGAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACTAAGGGGCTGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCGTAGGAAATTCATTCCCAGGCAGTCACAGAGTTTTGCAGGCCTCTGTGGTAGTGCACCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTCAAGTTCACAACCTGGTATTAGTTCAGCTTCTACGGATAATAACAAGTTACATCCACAAGCAACAGCAGTGGCACCTGTTGTGGCTTCAGGGGTTGGCATCAAAATGACAGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCACAACTCTCATGCTGAAACTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACTGGCCTGGGGAGGTGCATCATCTCAAAGGATAGAACCAAATAATCCTGCTACCATGCCTGCCCAGCCAGCTTCCCATGCCCCCTGGGGTGATGCTTCGTCTGTGCAGAACACTGCCTCTTTTAACACTGGAAATCCAATTGCGAGTTTACCCACACCTGGATTTCTGGGCATGACTGCACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTCAAACACCACAGCTCCATCTCCAGCTCAACCCAATATGCCTTGGGGCATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAACATGAATGTAAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATgggctgctcctagtcaggggctgcctcctagtcaggggctgcctccCGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGCCGTTCCCATGTAAATGCAAATGCAGGTTGGGTTGGGCCTGGTCAGGGTCTTGCACCTGGAAATGCCAATCCTGGTTGGGCTGCACCGACTGGGAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAATCATCATTTGGCAGCGGAGGCAGAGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTCTGCAAGTATTATGAGAGTGGACGTTGCAGGAAGGGGACTTCTTGTGATTTTCTACACACTTAG 4440 0.4284 MDVENEEAPLQQHSDSQCHTDLPNLPYASAVDLEEAAATTTEAVAVEPDALAVSDDGAETQVTDVAGDEMIEEKANEGIDVDDVALETDMVEEEPNLAIDAEDDEIEDRNTNEDALMEDEQQQEGEDVEQEGEGEEEEQQQVDEEEEGEQQQEDEEEEGEEEEAAAAAAAEEEEEEEEEEEEKQGEEEDGGMAMTEDTEKSEKSAAVSGGKRRRGAGKNAKATGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNASYMCYTCTFSLCKGCIKDTVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDRNSWEYLFKDYYIDIKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDEIFDATNDRGSDSDSSYENADLSRSKRKKAKKRGKSRSKGDDSSEWASTELLEFVMHMRNGDKSVLSQFDVHTLLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPKVGHFETLKLLESHFLLKDDSQAEDLQGSVVDTEMSHLEGDGNPNSHTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTEILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQEARVKDWLETETVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDANEVDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNHELGRNLSNKGFSIKGDNASNANEALNDAQLHRGRDRESQLSNSWERQKLSSTLESGAKNTQPLVASESFSSAVSEASAAPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSMVQLHKWSNTGYFPADLRIWRTTEKQDDSILLTDALAGNFSKEPSIVDKAQLVYDLHYPSSYSRKSPQQGIEVQAGERLSLDQNCGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSPLAVEVPKNPANGWGSDAGVRNEATNLPSPTPQTTPGGTKGLAFENKWSPTPVQLPGSLVGNSFPGSHRVLQASVVVHPEHAVQNAEKGSSSQPGISSASTDNNKLHPQATAVAPVVASGVGIKMTGANMQNQVVSSHNSHAETQGWGSAGVPKPEPLAWGGASSQRIEPNNPATMPAQPASHAPWGDASSVQNTASFNTGNPIASLPTPGFLGMTAPEPWRPPASSSQSNTTAPSPAQPNMPWGMGMPGNQNMNWGGVVPANMNVNWMPAQVPAPGNSNPGWAAPSQGLPPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWAAPTGNPGMWGSEQSHNGDRFPNQGDRRDSGYGGKSWNRQSSFGSGGRGGSSRPPFGGQRGVCKYYESGRCRKGTSCDFLHT 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00070 1479 MobiDBLite consensus disorder prediction 857 871 - -
Gma06g00070 1479 ProSitePatterns Zinc finger PHD-type signature. 237 297 IPR019786 -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 383 402 - -
Gma06g00070 1479 Pfam SWIB/MDM2 domain 442 515 IPR003121 -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 1409 1456 - -
Gma06g00070 1479 Coils Coil 135 190 - -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 752 817 - -
Gma06g00070 1479 SUPERFAMILY Plus3-like 577 707 IPR036128 GO:0003677
Gma06g00070 1479 Pfam Plus-3 domain 581 684 IPR004343 GO:0003677
Gma06g00070 1479 SUPERFAMILY FYVE/PHD zinc finger 233 287 IPR011011 -
Gma06g00070 1479 SMART gyf_5 926 981 IPR003169 GO:0005515
Gma06g00070 1479 Gene3D SWIB/MDM2 domain 427 525 IPR036885 -
Gma06g00070 1479 ProSiteProfiles Plus3 domain profile. 576 709 IPR004343 GO:0003677
Gma06g00070 1479 CDD SWIB-MDM2_like 440 515 - -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 855 891 - -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 188 209 - -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 1431 1445 - -
Gma06g00070 1479 Gene3D - 926 985 IPR035445 -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 1 25 - -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 89 187 - -
Gma06g00070 1479 CDD PHD5_NSD 236 281 - -
Gma06g00070 1479 SUPERFAMILY CCCH zinc finger 1457 1478 IPR036855 GO:0046872
Gma06g00070 1479 SUPERFAMILY GYF domain 917 978 IPR035445 -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 872 891 - -
Gma06g00070 1479 ProSiteProfiles GYF domain profile. 925 979 IPR003169 GO:0005515
Gma06g00070 1479 MobiDBLite consensus disorder prediction 535 567 - -
Gma06g00070 1479 CDD GYF 925 980 IPR003169 GO:0005515
Gma06g00070 1479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 328 IPR013083 -
Gma06g00070 1479 ProSiteProfiles SWIB/MDM2 domain profile. 434 517 IPR003121 -
Gma06g00070 1479 CDD Bbox1 282 309 - -
Gma06g00070 1479 ProSiteProfiles Zinc finger PHD-type profile. 234 300 IPR019787 -
Gma06g00070 1479 Gene3D - 578 707 IPR036128 GO:0003677
Gma06g00070 1479 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 56 1479 - -
Gma06g00070 1479 SMART rtf1 576 686 IPR004343 GO:0003677
Gma06g00070 1479 SMART swib_2 449 520 IPR019835 -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 382 436 - -
Gma06g00070 1479 ProSiteProfiles Zinc finger C3H1-type profile. 1454 1479 IPR000571 GO:0046872
Gma06g00070 1479 SUPERFAMILY SWIB/MDM2 domain 439 516 IPR036885 -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 89 225 - -
Gma06g00070 1479 MobiDBLite consensus disorder prediction 752 770 - -
Gma06g00070 1479 SMART PHD_3 236 282 IPR001965 -
Gma06g00070 1479 Pfam GYF domain 928 968 IPR003169 GO:0005515
Gma06g00070 1479 PANTHER UNCHARACTERIZED 56 1479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00070 Gma-Chr6 643623 655444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00070 234 305 PHD Transcription Factor Family AT5G36670 37.333 1.25e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma06g00070 Plus-3 2.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00070 - - gmx:100815079 2550.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00077 04 665289 676398 Gma06g00070 06 643623 655444 GST