LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00054	ATGGTTCTGAATGTTCATCGCGTATATTCTCCTACGCTGAATTCGATAATACTCTTACTTGCTCTCTGCACTTTATCAGGCAATGAATGCACTTCTCCTTTATCTGCTGCTTTTTTTTTTCTTCTTCCATCTTTTCTCCTTTGCTCATTTTCTTCGTTCTCAACCttctttgcagattgctatgacccgttggatcctaatggaaacatttccgtaacttttGACATCCTCGAACGTACTACAGATAATGGATATCTGGCAAGGGTGACCCTTGAAAACTACTATCAATATCGGCATGTAGAGAAACCCGGGTGGAAACTAGGATGGACGTGGGCTAACAATGAAGTGATATGGTCAATGAGTGGTGCCATAGCAACTGATAGAGGGAATTGTTCATCTTACAGTGGTTCTCAGATGCCACATTCATGCAAGAAAGATCCCACCATAGTTGATCTCTCTCTAGATGTCTCGCAAAACAGGTCAGAGCATTGTTGCCGTGGTGGTCTCCTCTCTGCCTGGTCTATTGATCCTTTCAATGCCTTCTCTTCATTTGAACTTGAAGTTCGCAACGTGGGAGATAACAACCCACTTGGACAAGCTCCTAATAATCTTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCCCTTCTTGACACTGATCTCTCTGTCTCCTCAGATTTTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCATAGCAAACACAATACCGGTATGCTGTGTTTCCCTCTCATCATTTTACAACCCTGCCATCACATCTTGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACAGCATCTTGCATAAGGCCTAGTTCCTTGCCACGGTCTAATGGAGACAACACAATTGATGAAATAATAGAATGCACCGACCACATGTGCCCAGTTCGAGTCCATTGGCATTTCAAGAACAACTATATGAACCAATGGAGGGTGAAGCTTACAGTTTCTAACTACAATTACAACAGAAACTACTCAAACTGGAACGTGCTGGTTCAACATCCTGGTTTCACCCAAAAAGCAAGAACTTACAGCTTCAACAGCACTAGACTTCCTACCCTTGGGCTCCAAGATGGAGTTTCCCTTTTTTGGGGGATAGACTATTACAACAATGAGCTAGTGCATTCTGATAAGGGTGTTGTGGGTCTTGTGACAACAGAAATACTATTGGATAAAGATCCAAATTCTTTCACAGACCAATCAGTGGAAGAAACCATGGCTGCCCAACCCAAACCTCAGAACCGACCCATTTCTAATATCGTCTTCGTCGTTGCTATGCAGACGGAGGCACTTCCCATCGTCAACAGATTCCAGCTCACTGAGGACCCTCACTCCCCATTTCCGCAAGGGGCTCCTTGGGTCCATTATCATGGGACATTCAAAGATCTCAATATAAACTTGATTTGGACTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTATTCTAGCATTACAACCAGACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATATTTTTGTTGTATCGGAATGTGCTTTTCATGACAGAAGAATACCTATACCTATTTTTGATCTGTATGGAGTGGGTCTTCGTAAAGCCTTTGAAACACCCAAACTTGTAAAGGAGCTTAATCTAAAGGTGGCTAAATTGTCTACTGGTGACTCTTTAGACATGACACAGCAGGATGGATCATTAATAATTGCAAATGATGCCACAGTTATAGATATGGAGGGAGCTGCTATTGCTTATGTTGCCGACCTACTGAAAGTTCCTGCAATTTTTATAAAAGCCGTGACTAATAACGTTGATGATGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGCAGCTCTAACTGTTGAACTTGGTCTGGCTGTCGAACAAGTTATTAATTTTATCAATGGAAAGTGCATATCTGAACTTTGGCAACCCAATTTCACCTTATCCTAG	2067	0.4165	MVLNVHRVYSPTLNSIILLLALCTLSGNECTSPLSAAFFFLLPSFLLCSFSSFSTFFADCYDPLDPNGNISVTFDILERTTDNGYLARVTLENYYQYRHVEKPGWKLGWTWANNEVIWSMSGAIATDRGNCSSYSGSQMPHSCKKDPTIVDLSLDVSQNRSEHCCRGGLLSAWSIDPFNAFSSFELEVRNVGDNNPLGQAPNNLTLMAPGPGYTCSPLLDTDLSVSSDFGGLRQVPVLRTWKSTCAYSSFIANTIPVCCVSLSSFYNPAITSCRNCSCGCREADKSTASCIRPSSLPRSNGDNTIDEIIECTDHMCPVRVHWHFKNNYMNQWRVKLTVSNYNYNRNYSNWNVLVQHPGFTQKARTYSFNSTRLPTLGLQDGVSLFWGIDYYNNELVHSDKGVVGLVTTEILLDKDPNSFTDQSVEETMAAQPKPQNRPISNIVFVVAMQTEALPIVNRFQLTEDPHSPFPQGAPWVHYHGTFKDLNINLIWTGNDPTLGVDSIGTIPSALATYAAILALQPDLIINAGTAGGFKAKGASIGDIFVVSECAFHDRRIPIPIFDLYGVGLRKAFETPKLVKELNLKVAKLSTGDSLDMTQQDGSLIIANDATVIDMEGAAIAYVADLLKVPAIFIKAVTNNVDDDKAIVEEFLQNLAALTVELGLAVEQVINFINGKCISELWQPNFTLS	688

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma06g00054	688	Pfam	COBRA-like protein	85	248	IPR006918	GO:0010215\|GO:0031225
Gma06g00054	688	SUPERFAMILY	Purine and uridine phosphorylases	442	658	IPR035994	GO:0003824\|GO:0009116
Gma06g00054	688	Pfam	Phosphorylase superfamily	442	658	IPR000845	GO:0003824\|GO:0009116
Gma06g00054	688	PANTHER	PROTEIN COBRA	50	420	IPR006918	GO:0010215\|GO:0031225
Gma06g00054	688	CDD	MTAN	442	656	-	-
Gma06g00054	688	PANTHER	COBRA-LIKE PROTEIN	50	420	-	-
Gma06g00054	688	Gene3D	Nucleoside phosphorylase domain	436	680	IPR035994	GO:0003824\|GO:0009116

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00054	Gma-Chr6	469198	477982	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g00054	34	420	COBRA Gene Family	AT3G29810	47.074	4.13e-118	359

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00054	-		-	vra:106760500	689.493

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g00054	06	469198	477982	Gma06g00054	06	469198	477982	ECH
	Gma04g00062	04	488212	496594	Gma06g00054	06	469198	477982	GST

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