LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00032	ATGGCTGATCCACAGCCGCTGCTTCTCAACGATTCCGAGCCAACTCAATTTCAAAACACCCGAATCGCCTCCCTTGACGTCTTTCGCGGCCTCTCTGTTTTTCTTATGATATTTGTGGATTATGCTGCTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGGATTCACTTGGCTGATTTCGTCATGCCTTTTTTTCTTTTCATTGCTGGAATTTCTCTTGCCCTCGTTTATAAGAGAAGGCCTCATAGAACCCAAGCTACATGGAAAGCTTTTGCTAGAGCTCTCAACCTCTTTGCTCTTGGTATTCTTCTTCAAGGTAGTGGCTATTTTCACGGAGTTACTTCCTTGACTTTTGGTGTTGACATTCAAAGAATTCGGTGGCTGGGCATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTATGCGAGATCTGGCTTCCAGCTCCACGATGGAAAGAATTAGGTTTCGTCAAAAGTTACTACTGGCAATGGTTTGTTGCAGTAATATTGTTGGCACTTTACTCTGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGACCTCTTCATTGCCTCCTATTGGTGGTGGTGATATTTACATGGTGAATTGTTCAGTGAGAGGTGATCTTGGACCTGCCTGTAATTCTGCTGGAATGATTGATCGCTATATTCTTGGTCTTGACCATCTGTATAGAAAGCCTGTTTACAGAAATCTCAAGGGGTGCAATATGTCTGCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCAGAAGGCATTTTAAGCTCCATAACAGCTGCAGTTTCGTGCATAATTGGACTTCAGTATGGTCACGTTCTTGCCCATCTACAGGACCACAAAGGGCGCCTATACAACTGGATGTGTTTTTCCCTTTCATTTTTGGCTCTTGGACTGTTTCTGGCATTAATAGGAATTCCTCTAAATAAATCGCTGTACACAGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTTTCTGGTAGATGTTCATGGTCACAGGCGTTTGACAGCGTTGTTGGAGTGGATGGGAAAACACTCCTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTGTTCAAGGATTTTATTGGACTAAACCCGAAAACAACATTGTAAGATGCTTTATGCTAGAAAACAGAATGTCGAAGGAAGTGAGCCAAGAAGGCCTGCAGAGGAAGGACTACGTAGACCCTCCTCCAGCCCCTCTTTTCGACCTTGCCGAGATCAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATTGCCTCACTCCTCTTCCTCTACGTCACCGTCGCCACCATCATCGGCCACAAGAAACAGACCGGACCATGCGACGGCGTTGGCCTTCTCGGCATCGCATGGTCCTTCGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCCCGCAAGGTGTCTCTCATTCGCGCCGTGTTCTACATGGTAGCACAGTGTCTTGGTGCCATCTGCGGTGTTGGGTTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAGCGCAGGCTACAACAAAGGCAGTGCTCTGGGTGCTGAGATTATCGGCACTTTCGTCCTTGTCTACACCGTTTTCTCAGCTACCGACCCCAAGAGAAGCGCGCGTGACTCCCATGTCCCCGTGTTGGCCCCATTGCCCATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCCATCACCGGTACCGGGATCAACCCAGCCAGGAGCTTGGGTGCAGCTGTTATCTACAACAATGGCAAAGTTTGGGACGAGCATTGGATATTCTGGGTTGGGCCATTGGTGGGAGCTTTGGCGGCGGCGGCATACCACCAGTACATCCTTAGAGCAGGGGCTATTAAGGCCTTGGGTTCATTCAGGAGCAACCCTACCAACTAG	2082	0.4817	MADPQPLLLNDSEPTQFQNTRIASLDVFRGLSVFLMIFVDYAASIFPIIAHAPWNGIHLADFVMPFFLFIAGISLALVYKRRPHRTQATWKAFARALNLFALGILLQGSGYFHGVTSLTFGVDIQRIRWLGILQRISIGYIVAALCEIWLPAPRWKELGFVKSYYWQWFVAVILLALYSGLLYGLYVPDWQFDVSASTSSLPPIGGGDIYMVNCSVRGDLGPACNSAGMIDRYILGLDHLYRKPVYRNLKGCNMSAKGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKGRLYNWMCFSLSFLALGLFLALIGIPLNKSLYTVSYMLLTSAASGLTFIALYFLVDVHGHRRLTALLEWMGKHSLSIFVIVSSNLAVIAVQGFYWTKPENNIVRCFMLENRMSKEVSQEGLQRKDYVDPPPAPLFDLAEIKLWSFYRALIAEFIASLLFLYVTVATIIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVSAGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNGKVWDEHWIFWVGPLVGALAAAAYHQYILRAGAIKALGSFRSNPTN	693

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma06g00032	693	PANTHER	HEPARAN-ALPHA-GLUCOSAMINIDE N-ACETYLTRANSFERASE-LIKE ISOFORM X1	1	410	-	-
Gma06g00032	693	CDD	MIP	451	675	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	PRINTS	Major intrinsic protein family signature	655	675	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	PRINTS	Major intrinsic protein family signature	451	470	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	PRINTS	Major intrinsic protein family signature	579	597	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	PRINTS	Major intrinsic protein family signature	493	517	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	PRINTS	Major intrinsic protein family signature	615	637	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	PRINTS	Major intrinsic protein family signature	530	549	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	TIGRFAM	MIP: MIP family channel proteins	455	671	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
Gma06g00032	693	ProSitePatterns	MIP family signature.	511	519	IPR022357	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00032	Gma-Chr6	272405	283730	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g00032	416	693	Major Intrinsic Protein MIP	AT2G16850	88.129	1.56e-175	500

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00032	-		-	vra:106761912	1225.31

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma06g00032	06	272405	283730	Gma06g00032	06	272405	283730	ECH

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