LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g00009	ATGGGTTCCAGCAGTACCTATGCAGCGGTTGTGTATTTCTCGTCGTGTGGGAAGGTGAACCCGGAGCTTGGGGGTCAGCATATGGAATTGCGATTGGTGGAGTATTTTGCTGATGAGTTCAATGCACAAGTTGGTGGTGGAATAGATGTCAGGCATTTTCCCAAGGCCATGGCTACATTGAAGAAACAGGTTAAACGAAGAAAAGAAATGCTTAGTGCAAACACAGTTGCTCCTATTTCAGTTGAATCGCTTGATGATGGCGTCGACTTCGGGAGCACAATGAACCGTGAGAAATTTGAAGACCTCTGTCAAGACATTTGGGATAAATCTCTTTTGCCTGTGAAAGAGGTGCTTCAGCATTCTGGCCTGTCATTGGACCTAATATATGCACTGCAGTTGATTGGAGGTGCTACCAGAGTGCCAAAATTACAGGCTCAGCTTCAACAATTCCTTGGGAGAAAACAACTTGACAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGCTCAGCTCCGCACGCTGCAAATTTAAGTGACGGAATCAAATTGAAAAGCAAACTAGGAATACTTGATGCTTCCATGTATGGTTTTGTGGTTGAGTTGAGTGCTCCTGATCTTTCCAAAGATGAAAGCTCTAGGCAGTTACTTGTACCGCAAATGAAGAAAGTCCCCAATGCCATTATTGAAATAACAGAGAGGGTGGAAGTTCCAAGGAAGAATATGACCATAGAGAATTCAACCATTTCATCAAATGTTTCGGCTGAATCTGCTGGTAGTAATAGTTCTGAGGAAAACATGCAAACTGATAGTGAGATTAGTAAGACATCCAACGGTAGTGCAGAGGAGCAAGCTACTGCTGCTGAGCCCGCTACAGAGGAAAAGCTGAAAAAGCGAACCTTTAGGTCCTTCATTGAGAAGCTTGATCAGGTTCAAGATTGGTTGTATAGAGATGGTGAAGATGCCAATGCCACAGAGTTTCAAGAGCTTCTAGATCAGTTAAAAACTGTTGGAAATCCGATTTTCTTCAGGTTGAAAGAGCTGACAGCTCGACCAGCAGCAGTTGAGCATGCTCATAGATACATTGATGAGTTGAAAGAGTGGAAAGCAAACAAGTCTTGGTTTCCACAAGAACAAGTATATGAGATTATAAAAAATTTAAGAATTGGCTGGATGACAAAGAAGCTGATCAAAAGAAGACTTCTGGATTCAGGAAGCCCGCATTTATCTCTGAAGCAGTATATTCAAAGGTGCTTGATCTGCAAAACAAGGTTTCCAGTATTAATAGAATTCCCAAGCAAAATACATGATGAGCTATGCTAA	1320	0.422	MGSSSTYAAVVYFSSCGKVNPELGGQHMELRLVEYFADEFNAQVGGGIDVRHFPKAMATLKKQVKRRKEMLSANTVAPISVESLDDGVDFGSTMNREKFEDLCQDIWDKSLLPVKEVLQHSGLSLDLIYALQLIGGATRVPKLQAQLQQFLGRKQLDRHLDADEAIVLGSAPHAANLSDGIKLKSKLGILDASMYGFVVELSAPDLSKDESSRQLLVPQMKKVPNAIIEITERVEVPRKNMTIENSTISSNVSAESAGSNSSEENMQTDSEISKTSNGSAEEQATAAEPATEEKLKKRTFRSFIEKLDQVQDWLYRDGEDANATEFQELLDQLKTVGNPIFFRLKELTARPAAVEHAHRYIDELKEWKANKSWFPQEQVYEIIKNLRIGWMTKKLIKRRLLDSGSPHLSLKQYIQRCLICKTRFPVLIEFPSKIHDELC	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g00009	439	Gene3D	-	19	157	-	-
	Gma06g00009	439	PANTHER	HEAT SHOCK 70 KDA PROTEIN 17	18	224	-	-
	Gma06g00009	439	SUPERFAMILY	Actin-like ATPase domain	3	178	IPR043129	-
	Gma06g00009	439	PANTHER	HSC70CB, ISOFORM G-RELATED	18	224	-	-
	Gma06g00009	439	MobiDBLite	consensus disorder prediction	241	284	-	-
	Gma06g00009	439	Gene3D	-	279	354	IPR029048	-
	Gma06g00009	439	SUPERFAMILY	Heat shock protein 70kD (HSP70), C-terminal subdomain	285	351	IPR029048	-
	Gma06g00009	439	PANTHER	HSC70CB, ISOFORM G-RELATED	225	302	-	-
	Gma06g00009	439	PANTHER	HSC70CB, ISOFORM G-RELATED	302	385	-	-
	Gma06g00009	439	MobiDBLite	consensus disorder prediction	241	293	-	-
	Gma06g00009	439	PRINTS	70kDa heat shock protein signature	128	144	-	-
	Gma06g00009	439	PRINTS	70kDa heat shock protein signature	160	180	-	-
	Gma06g00009	439	PANTHER	HEAT SHOCK 70 KDA PROTEIN 17	302	385	-	-
	Gma06g00009	439	PANTHER	HEAT SHOCK 70 KDA PROTEIN 17	225	302	-	-
	Gma06g00009	439	Pfam	Hsp70 protein	20	203	IPR013126	GO:0005524\|GO:0140662
	Gma06g00009	439	Gene3D	-	158	175	-	-
	Gma06g00009	439	Gene3D	Actin; Chain A, domain 4	24	109	-	-
	Gma06g00009	439	ProSitePatterns	Heat shock hsp70 proteins family signature 3.	131	145	IPR018181	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g00009	Gma-Chr6	110093	111919	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g00009	23	178	Calmodulin-binding Proteins	AT5G02500	34.615	2.16e-25	106

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g00009	K09486		-	gmx:100788296	348.977