Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00004 ATGGAATATGGTGGGTTGGTGCAGAATGCATATGGTTCATATGGGAGCTTCTCAGATATTCTTGGCCCAGAAACGGATTTCATCGATGAGCTGTTTGTAGAAGGATGCTGGCTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGCACGGAGGCTAATTCTTCAAAGTCAAACACGATGAGGAGCATGGAGTCGACGCAAATAATATTCCAACAAGAAGAATCATTACCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGGCCAAGGGAAAATCCGGGTCCATCTTCCTCTGTGAAAGAGAGATTAGTGATTGCTGTTGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCCGATTCAGGTGTGGGTGCCCGAACGTAGATCTGCACGTGCTCAGCCTCAGGATAATATTTACCCATACGCCGCCGCGCTTCTTAATGGGGATGCAGCAGCTTTTCAGATTCAAGAGGATTGGGTTCATGTTAATGATCAGTACTGGACTCCCAACGTCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTCCGTACTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGAGGCACTGCTATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCTCCCGACCTTCAGTGTACTGTTGATTTTACGAGCAGTACTTCTTCTCATCATCACAACTTCATTCCACCAGCCGTGACCGTCAAGGGCTTTGACGAGCTGTACCAAAGTGCATTAAATGGGATAGTACAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTGACATGGGCTCCCTGCATCCAACAAGCAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGATGAATTATGTGTCGACTGTGTATGCTGCTAGTTTTGTGGCGGATGTAGAGCTAATGGGTTTCCTGGAAGCCTGCTCTGAGTGCCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATTACTTCCTTCAGCAAGGCGGAGTATCCTCTGGCACATCATGCTAACATGTTTGGCTTGCATGCTGCTCTGGGCATTCCACTCCGGAGTGCCTCCGCTGATTTTGTTTTAGAATTTTTCCTGCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGTTGCTCAACTCCTTGTTTATGCTAGTGCAACAAGCTTGCCGGAGTTTGCATCTTGTCATGGAGGAGGAGGAGGAACTAATCGCGTTGCCGTCCGTCGTTGGCAAAGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAGCAATACTAATGAGCAGGTCAGTGTTGGTGTTGAGAGTACTGCAGCTTTTTGTGGCCGCCGGGTTGGCCGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCAGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTAAAAAGGATATGCAGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCTTTAAGAAAACTTCAACTTGTGATTGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCAGCCAATGGCGTTTCTGAATCATCCAACATCAATAATAATAATAATGATAATTCTAAGTTTTTTTCTGAATATAACCAAGGTCAAGGAGCTACTACATTCAAATCCCCAACAACTTCGCCTTGCAGTCAGACCACTATTGTGATGTCAGAGAGCCAACCACTTGGACTTGGTGCATCAGTCCAGGTGGTCCAAGAGGAAGCAAAACATTTCGCCCACCAACATCTTGAGTCTCTACCTCCCTTGCCCCAATCTAGTACTAGTGTCTGGAACATGGGTACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATTCGCTTCAGCTTGCAACCAAATTGGGGATTCAGAGATTTGCAGAAGGAGATTTCAAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAAGGCATAAATACATCATCTCAGTCTCAGAGCCGCACAATTAGACTCTTCCTCTTTCATGCTTCGCCTCTCAATCACGCAAATGCATTTCCAGGCACCAGCCCCAGCTCCTAG 2379 0.4691 MEYGGLVQNAYGSYGSFSDILGPETDFIDELFVEGCWLETRVGSYLNCGTEANSSKSNTMRSMESTQIIFQQEESLPDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLPIQVWVPERRSARAQPQDNIYPYAAALLNGDAAAFQIQEDWVHVNDQYWTPNVRFFRSHEYPRHLRTPGSLALPVFERGTAMCLGVVEILMPNNPPDLQCTVDFTSSTSSHHHNFIPPAVTVKGFDELYQSALNGIVQVLTCVCKAHNLPLALTWAPCIQQAGKSGCGHSNDEMNYVSTVYAASFVADVELMGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITSFSKAEYPLAHHANMFGLHAALGIPLRSASADFVLEFFLPKDCHDTQDQKQLLNSLFMLVQQACRSLHLVMEEEEELIALPSVVGKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCSNTNEQVSVGVESTAAFCGRRVGRKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSAANGVSESSNINNNNNDNSKFFSEYNQGQGATTFKSPTTSPCSQTTIVMSESQPLGLGASVQVVQEEAKHFAHQHLESLPPLPQSSTSVWNMGTFRVKATFGDEKIRFSLQPNWGFRDLQKEISRRFNLNEISNIQLKYLDDAREWVLLTCDADLEECKGINTSSQSQSRTIRLFLFHASPLNHANAFPGTSPSS 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00004 792 ProSiteProfiles PB1 domain profile. 691 776 IPR000270 GO:0005515
Gma06g00004 792 ProSiteProfiles RWP-RK domain profile. 501 582 IPR003035 -
Gma06g00004 792 CDD PB1_NLP 692 775 IPR034891 -
Gma06g00004 792 PANTHER PROTEIN NLP2 29 786 - -
Gma06g00004 792 PANTHER PROTEIN NLP8 29 786 IPR045012 GO:0003700
Gma06g00004 792 SMART PB1_new 691 776 IPR000270 GO:0005515
Gma06g00004 792 Gene3D - 692 776 - -
Gma06g00004 792 Pfam RWP-RK domain 515 562 IPR003035 -
Gma06g00004 792 SUPERFAMILY CAD & PB1 domains 682 778 - -
Gma06g00004 792 Pfam PB1 domain 691 775 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00004 Gma-Chr6 46146 48711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00004 13 788 NLP Transcription Factor Family AT2G17150 40.975 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma06g00004 PB1 5.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00004 - - gmx:100798024 1577.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00004 06 46146 48711 Gma06g00004 06 46146 48711 ECH
Gma04g00007 04 74065 76794 Gma06g00004 06 46146 48711 GST