Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02410 ATGGAGTACGGTGGGTCGCAGTCCCCAGGGGAGCAAGATGGTTCGGATTCCCAAGAGAGGAGGAAACGCTATCATCGTCATACTGCCAATCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCAGATGAGAAACAAAGGTTGCAATTAAGCAGGGAGTTAGGCCTGGCCCCGAGGCAGATTAAGTTCTGGTTCCAAAATAGGAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGAGGCCTTGAAGAACGTTATCTGCCCTTCTTGTGGTGGCCCACCTCTCAATGACGATTCTTATTTTAATGACCATAAGTTGCGATTAGAGAATGCCCACCTCAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAATGGCGAGTTTTGGAAACCAAGGGATGGTTGGTCCGGCTCCTGCTCCTTCCCTTAATCTTGATCTTCTTCCTGCTGGGACTTCCTCATCCATGCCAAATTTGCCTTATCAGCCTCCTTGCCTTTCGGACATGGACAAGTCTCTCATGTCAGACATTGCCTCCAATGCCATGGAAGAATTTCTCAGGCTCGTGCAGACAAATGAACCCTTGTGGCTTAAATCAAACGTCGACCGTAGAGATGTTCTTAGTTCTGATGCCTATGATAGAATGTTCTCCAAGCCCAATACTCGCTCCAAGAATCCTAATGTTCGAATTGAAGCATCCCGAGATTCTGGAGTCGTATTACTGAATAGTTTAGCTTTGGTTGATATGTTTATGGACCCAAACAAATGGATCCAACTTTTTCCCACAATTGTCTCAGTGGCAAGGACTATTCAAGTCATATCTTCTGGGGTCATGGGCAGTTGCAGTGGTTCTTTACAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTCGGGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAGGGCACATGGGCAGTAATGGACGTTTCTTATGATTTTCCCCAAGATAGCCACTTTGCTCCTCAGTTTCGGTCTCATCGTTGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGATGGGCATTCCAAGATTACTTGGATTGAACACGTAGAGATTGAAGATAAAACTCTTCCTCATCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTACTACCCTCCAGAGGATGTGTGAAAGATTTACTTATCTGATGGCTACAAGCAATCCTACCCGGGATAATCTTGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCGATTTTTGTGCCAGCATTAGCACATCAAGTGGCCATCGATGGACCACGCTCTCTGGGTTGAATGAAATCGTAGTAAGAGTCACTGTCCACAAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGAGCTTTCAACAACAGTCAGAACATGTTAATACTACAAGAAAGCTGCATAGATTCCTATGGTTCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATCAACACAGCAGTAAGTGGTGAAGACCCTTCATACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGTCAGCCTGACCAGGAAGGAGATGGAGCATCAACTAGCTCAAACACAAACAGGAATATAGCAAGGTCTGGTGGTTCACTAGTTACAATTGCATTCCAAATTCTAGTGAGCAGCTTGCCATCTGCTAAGGTCAATATGGAGTCGGTGACAACTGTTAACAATCTTATTGGCTCCACTGTCCAGCAAATAAAGTCTTCCCTAAGTTGTCCTACCTAG 2142 0.4533 MEYGGSQSPGEQDGSDSQERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFNDHKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASFGNQGMVGPAPAPSLNLDLLPAGTSSSMPNLPYQPPCLSDMDKSLMSDIASNAMEEFLRLVQTNEPLWLKSNVDRRDVLSSDAYDRMFSKPNTRSKNPNVRIEASRDSGVVLLNSLALVDMFMDPNKWIQLFPTIVSVARTIQVISSGVMGSCSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAVMDVSYDFPQDSHFAPQFRSHRCPSGCLIQDMPDGHSKITWIEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLTTLQRMCERFTYLMATSNPTRDNLGGVISSPEGKRSMMKLAQRMVTDFCASISTSSGHRWTTLSGLNEIVVRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHTVFNFFKDENKRPQWDVLSNGNAVQEVANIANGLHPGNCISVLRAFNNSQNMLILQESCIDSYGSLVVYCPVDLPSINTAVSGEDPSYIPLLPNGFTILPDGQPDQEGDGASTSSNTNRNIARSGGSLVTIAFQILVSSLPSAKVNMESVTTVNNLIGSTVQQIKSSLSCPT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02410 713 CDD homeodomain 20 79 IPR001356 GO:0003677
Gma05g02410 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 710 IPR042160 -
Gma05g02410 713 Pfam START domain 224 448 IPR002913 GO:0008289
Gma05g02410 713 SUPERFAMILY Bet v1-like 469 706 - -
Gma05g02410 713 SMART HOX_1 19 82 IPR001356 GO:0003677
Gma05g02410 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 710 - -
Gma05g02410 713 MobiDBLite consensus disorder prediction 640 660 - -
Gma05g02410 713 Gene3D - 7 91 - -
Gma05g02410 713 MobiDBLite consensus disorder prediction 1 26 - -
Gma05g02410 713 Gene3D - 222 448 IPR023393 -
Gma05g02410 713 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Gma05g02410 713 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Gma05g02410 713 CDD START_ArGLABRA2_like 218 447 - -
Gma05g02410 713 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Gma05g02410 713 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Gma05g02410 713 SMART START_1 223 448 IPR002913 GO:0008289
Gma05g02410 713 ProSiteProfiles START domain profile. 214 451 IPR002913 GO:0008289
Gma05g02410 713 SUPERFAMILY Bet v1-like 215 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02410 Gma-Chr5 44875319 44878198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02410 16 713 Homeobox Transcription Factor Family AT1G73360 63.068 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma05g02410 START 6.4e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02410 K09338 - gmx:100796042 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02410 05 44875319 44878198 Gma08g00548 08 4502389 4505890 GST
Gma05g02410 05 44875319 44878198 Gma16g01753 16 38694601 38698098 PCT
Gma05g02410 05 44875319 44878198 Gma09g01579 09 40993985 40997390 PCT
Gma16g01753 16 38694601 38698098 Gma05g02410 05 44875319 44878198 PCT
Gma09g01579 09 40993985 40997390 Gma05g02410 05 44875319 44878198 PCT