Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02405 ATGTTAGTAGTCAATAACTCATCTCCCACTTCTGAGGCCGAGAATGGTACTGCTGCTGCCACTAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTGGAATCAGATcgttatgtgtgtgagatctgcaaccagggattccagagggaccagaaccttcagatgcaccggcggaggcacaaggtgccgtggaagctgttgaagagggaaACGCCGGTGGTGAAGAAGAGAGTGTTTGTATGCCCGGAGCCTAGTTGTTTGCACCATGACCCATGCCATGCTCTGGGTGATCTTGTTGGAATAAAGAAGCACTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTATGCGGTGCAGTCCGATTACAAAGCACATCTCAAAACTTGTGGCACCCGAGGACACTCTTGCGATTGTGGCCGCGTTTTCTCAAGggtggagagcttcattgagCACCAAGACGCGTGCAACGTGGGGAGGTTGGGGCCAGAAACACAGCCACAGCCACAGACACAGACACAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCGAAACCAATTTCAGCAATGGAGCCCCTTGGCCCCAAAGCGGTACTGTAATAATTCCAAAGCCCTCCGTAACAGTATTAGAACCCTCCTCATACTCCAACCCTACTACCACTGCCGAAACCAACATCATCAACGACGTCCACCCCAACCTGGAGCTTCAGCTCTCTACAGCTACTCCTTCATCCAAAGCTAATTATAACCACTCCATACAGACACAGTTGCAGCTATCCATAGGGATAGGGTCCTTGGAAGAGCAGTTGAGGATAGCGATGGCTGAGAAAGCGTTGGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATCGAACTGGCTGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAACAAGCGCTTGCGGAACTTGACAAAGCCTATGCCTTGAAGGACCATGCAATCAAGCACATCAATTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCATTTTCAATCGCCAACCTCCCACGACAACTCTTTCGTCTTCAGCTACATAACACAAGCTCAAAGCCAACTAGAAAAACATCGACTCAAACCCATTATTAACTCTTAA 1203 0.4447 MLVVNNSSPTSEAENGTAAATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQPQPQTQTQAVQAAACLSRTASSETNFSNGAPWPQSGTVIIPKPSVTVLEPSSYSNPTTTAETNIINDVHPNLELQLSTATPSSKANYNHSIQTQLQLSIGIGSLEEQLRIAMAEKALAEEARKQAKRQIELAELEFTNAKRIRQQALAELDKAYALKDHAIKHINSTMLQITCLACKHHFQSPTSHDNSFVFSYITQAQSQLEKHRLKPIINS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02405 400 SUPERFAMILY beta-beta-alpha zinc fingers 51 149 IPR036236 -
Gma05g02405 400 Gene3D Classic Zinc Finger 114 195 - -
Gma05g02405 400 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 6 391 - -
Gma05g02405 400 Coils Coil 288 336 - -
Gma05g02405 400 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Gma05g02405 400 Pfam Zinc-finger of C2H2 type 52 70 - -
Gma05g02405 400 PANTHER OS03G0310200 PROTEIN 6 391 IPR039288 GO:0009630
Gma05g02405 400 MobiDBLite consensus disorder prediction 1 38 - -
Gma05g02405 400 Gene3D Classic Zinc Finger 30 93 - -
Gma05g02405 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Gma05g02405 400 MobiDBLite consensus disorder prediction 1 18 - -
Gma05g02405 400 SMART c2h2final6 52 74 IPR013087 -
Gma05g02405 400 SMART c2h2final6 93 123 IPR013087 -
Gma05g02405 400 SMART c2h2final6 129 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02405 Gma-Chr5 44815939 44817448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02405 14 390 C2H2 Transcription Factor Family AT2G01940 56.901 6.88e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g02405 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02405 K25871 - gmx:100798167 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02405 05 44815939 44817448 Gma05g02405 05 44815939 44817448 ECH
Gma05g02405 05 44815939 44817448 Gma08g00543 08 4442994 4444840 GST
Gma05g02405 05 44815939 44817448 Gma07g00975 07 10816309 10819730 PCT
Gma05g02405 05 44815939 44817448 Gma09g01597 09 41260331 41263406 PCT
Gma07g00975 07 10816309 10819730 Gma05g02405 05 44815939 44817448 PCT
Gma09g01597 09 41260331 41263406 Gma05g02405 05 44815939 44817448 PCT