Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02404 ATGGAAGGAGGATCAGGTGGCGAGAGGAACAGTAGTGTATACCGAGAGTGCTTGAGAAATCATGCAGCCAGCCTAGGAAGCTACGCCACGGACGGGTGCGGCGAGTACACGGTGGACGGCGCGGGGGGACTACAATGCGCCGCGTGCGGGTGCCACCGCAACTTCCACCGGAAAGTGAAGTACCTGGCGGCGGCTGAAAGCCCTCCCACGGAGTATGGGGGCAGCAACAGCAAGAAGCGGTTCAGGTCTAAGTTCACGGAAGATCAAAAGGAGAAGATGCTAGGGTTTGCGGAGAAGCTTGGTTGGAAGCTTCAGAGGAGGGATCTTGATGATGAGATAGAGAGGTTTTGCCGAAGCGTTGGGGTGAGTAGGCAAGTCTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCCTCCTCCTCTTCTACCGCCGCCAATGTCTCCTCCCTCACCCAGTAA 459 0.5556 MEGGSGGERNSSVYRECLRNHAASLGSYATDGCGEYTVDGAGGLQCAACGCHRNFHRKVKYLAAAESPPTEYGGSNSKKRFRSKFTEDQKEKMLGFAEKLGWKLQRRDLDDEIERFCRSVGVSRQVFKVWMHNHKNSSSSSSTAANVSSLTQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02404 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 144 - -
Gma05g02404 152 Gene3D - 64 142 - -
Gma05g02404 152 Pfam ZF-HD protein dimerisation region 13 59 IPR006456 -
Gma05g02404 152 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 59 IPR006456 -
Gma05g02404 152 SUPERFAMILY Homeodomain-like 70 136 IPR009057 -
Gma05g02404 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 144 - -
Gma05g02404 152 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 14 58 IPR006456 -
Gma05g02404 152 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 78 136 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02404 Gma-Chr5 44804027 44804485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02404 14 137 ZF-HD Transcription Factor Family AT4G24660 42.941 4.31e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma05g02404 ZF-HD_dimer 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02404 - - gmx:100815758 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02404 05 44804027 44804485 Gma08g00542 08 4432820 4433278 GST
Gma05g02404 05 44804027 44804485 Gma07g00972 07 10778504 10779034 PCT
Gma05g02404 05 44804027 44804485 Gma09g01600 09 41303976 41304707 PCT
Gma07g00972 07 10778504 10779034 Gma05g02404 05 44804027 44804485 PCT
Gma09g01600 09 41303976 41304707 Gma05g02404 05 44804027 44804485 PCT