Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02374 ATGGCTGCTTTCTTTGGTTCCCCACCAATTTTCTCCCTCCCCCCTACTATTATTAGAACTCATCACATTTCTTCATCATCACAAACTCCACCACCAACACCTTCACCACAATCTCAGCCTCCAACTTCGTCTCCACAGCAGCTAAGAACAACAAATTTGAATGAGGAATCAGTGCAAGTGTCCACTGAAGCTAAGCAACAGAAGCCCATCAAACCAGTCACTTCATCCACTAAGGTTGGATCCACGGATTGGATAGCCACTTCCTTGACCAGAAGGTTTGGGATAGGAGCTGGTCTTGCATGGGTTGGCTTTCTTGCATTTGGTGTCATCTCAGAACAAATCAAGACTCGCCTTGAGCTGTCTCAGCAAGAGGCAAATACAAGGAACGTTGAGAAGGTGGAAGAGGTGGTGCTTCCTAATGGCATAAGGTACTATGAGTTGAAACTTGGTGGTGGCGCTTCACCAAGGCCGGGAGATTTGGTTGTGATTGATATCATGGGAAAAATTGAAAGTAGTGAAGTGTTTGTAGACACATTTGAGGGGGACAAGAAACCATTGGCTCTAGTGATGGGGTCAAGGCCATATAGTAAGGGAGTCTGTGAAGGTATAGAATATGCACTTAAAACTATGAAGGCTGGAGGCAAGAGGAAGGTAATAGTCCCTCCTAAATTGGGGTTTGGAGAGAATGGTGCTGACTTAGGCACTGGTGTGCAAATTCCTCCACTTGCAACACTTGAATACATTCTAGAGGTGGTTAATTCCAAATCTCCATCACGTTTCTGTTTCAGTTATTCTCTTCGTTCGCGACGCCATTTTGTTTCGCTGAAAAGATTCCCGACGCATCTCATAACTTTTGACAAAGGATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGATACCACGGTGGGTGAATCTGCGCATTGTGAGGTCAGCAAAGGATAAACGTTTCGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAGAAGGTCCCCAATCTTTACATCAAGGCACTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGCAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGCGAGGAGGAAAAAGAAGAGGAGAGCGAGGAAGAGTATGACAGTGATGGTGAGATTATTGATCCAGATCAGCTTCAAAAACCAGAAGCAAAATCTGATTCGGAGGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGACGCGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTCGAACAGGTTGAGCAGCTCACTTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATGTGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTGCAGTACCCAAATATAGTGGCTGATGATTTGGTTGAACCAGACGAGAATGAAACTCAGAAAGGTCCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTTTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGACTGAATTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGAAGGAATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTTGCGCGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATGTATTGGTATCTATGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCATCATGCTCTACTTGATGAGTTCTCAACAGCCCGTGATCTGCTTCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTTTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGCGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCCTATCATATGCACATCAATCTAGAGCTCCTGGAGGCAGTACATCTTGTTTCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGACTTTCCGTCGCCTGCTTGAGGTAAGTGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTAACAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTGTGGAAATTTGTGAGAAATCGAGACACCGTACTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCGTTGAGCCTGGATCAACTCACAAAATTTTTTGATCTCTCTGTTTGTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCCAGGCTTCAGGCATTGGCATTCCAATTGACCGAGAAATTATCTGTCCTTGCAGAGAGTAATGAAAAAGCAGCAGAGGCCAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGTAGAGATGGCCAGGACTATGCTGCCGCCGCGGCTGCCGGCAGTGGTACAGCCTCTTCCGGTGGTAGGTGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGGTATGGTGGAAGGCCAATGGCATTGGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAAGGGGTTCGTATGGAGGTTCAGGGAGGACTGCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGAGATGGATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCCTGA 3570 0.4566 MAAFFGSPPIFSLPPTIIRTHHISSSSQTPPPTPSPQSQPPTSSPQQLRTTNLNEESVQVSTEAKQQKPIKPVTSSTKVGSTDWIATSLTRRFGIGAGLAWVGFLAFGVISEQIKTRLELSQQEANTRNVEKVEEVVLPNGIRYYELKLGGGASPRPGDLVVIDIMGKIESSEVFVDTFEGDKKPLALVMGSRPYSKGVCEGIEYALKTMKAGGKRKVIVPPKLGFGENGADLGTGVQIPPLATLEYILEVVNSKSPSRFCFSYSLRSRRHFVSLKRFPTHLITFDKGWLQDSGPRVEVIPRRRRVIMMRRLIPRWVNLRIVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEESEEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHVPINVWKKCVQNMLIILDILVQYPNIVADDLVEPDENETQKGPEHNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVVARKPTFPENSRTLMDVLVSMIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLNKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVCRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSVLAESNEKAAEARVGGGGLDLPLRRRDGQDYAAAAAAGSGTASSGGRWQDLSLSQPRQGSGRAGYGGRPMALGQAAGSGYSRGRGRGSYGGSGRTAQRGSALRGPQGDGSTRMVSLKGVRA 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02374 1189 MobiDBLite consensus disorder prediction 457 492 - -
Gma05g02374 1189 MobiDBLite consensus disorder prediction 399 418 - -
Gma05g02374 1189 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 319 1188 - -
Gma05g02374 1189 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 982 1070 - -
Gma05g02374 1189 MobiDBLite consensus disorder prediction 419 438 - -
Gma05g02374 1189 MobiDBLite consensus disorder prediction 22 77 - -
Gma05g02374 1189 Gene3D - 110 259 IPR046357 GO:0003755
Gma05g02374 1189 ProSiteProfiles PCI domain profile. 881 1053 IPR000717 -
Gma05g02374 1189 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 285 1132 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma05g02374 1189 MobiDBLite consensus disorder prediction 439 456 - -
Gma05g02374 1189 MobiDBLite consensus disorder prediction 42 77 - -
Gma05g02374 1189 SUPERFAMILY FKBP-like 83 252 - -
Gma05g02374 1189 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 158 255 IPR001179 GO:0003755
Gma05g02374 1189 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 319 1188 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma05g02374 1189 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 320 913 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gma05g02374 1189 Coils Coil 408 435 - -
Gma05g02374 1189 MobiDBLite consensus disorder prediction 1110 1127 - -
Gma05g02374 1189 SMART PINT_4 982 1070 IPR000717 -
Gma05g02374 1189 MobiDBLite consensus disorder prediction 1102 1189 - -
Gma05g02374 1189 Pfam PCI domain 921 1049 IPR000717 -
Gma05g02374 1189 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 154 251 IPR001179 GO:0003755
Gma05g02374 1189 MobiDBLite consensus disorder prediction 398 492 - -
Gma05g02374 1189 SUPERFAMILY "Winged helix" DNA-binding domain 977 1052 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02374 Gma-Chr5 44591741 44599744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02374 320 1189 Eukaryotic Initiation Factors Gene Family AT3G56150 70.056 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02374 K03252 - gmx:100779751 1630.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02374 05 44591741 44599744 Gma05g02374 05 44591741 44599744 ECH