Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02357 ATGACAGACATGGATCATTCCAAAAAAGTGGCCGATAGATATCTAAAGCGTGAAGTCCTTGGTGAAGGTACTTATGGAGTTGTGTACAAAGCCATTGATACCCACACAGGGCAGACCGTTGCAATTAAGAAAATTCGGCTTGGCAAACGGAAAGAAGGGGTAAATTTTACAGCTCTTAGAGAAATTAAGCTGCTAAAAGAGCTCAAAGATCCAAACATTGTTGAATTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTCATACGAGACCGAAATATTTTTCTTTCACCAGGTGATACAAAATCCTACCTTCAAATGACACTAAAAGGTCTTGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGACATGAAGCCAAATAATTTATTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGATGTTTGGAAGCCCAGATAGAAGGTTCACTCACCAGGTTTTCGCTCGGTGGTATAGAGCTCCTGAGTTATTATTTGGTGCCAAGCAATATGGTCCTGGAGTTGATGTTTGGGCTGCAGGTTGTATATTTGCTGAACTTCTTCTTCGTCGACCTTTTTTGCAGGGTACAAGTGACATTGATCAATTAGGAAAGATTTTTTCTGCATTTGGCATTCCAACAGCTCCTCAGTGGCCTGATATGGTATACCTGCCTGATTATGTGGAATACCAATATGTTCTTGCCCCCCCTCTGCGTTCCTTATTTCCGATGGCAACTGATGATGCTCTAGATCTGTTGTCAAAGATGTTTACATATGATCCAAAAACTAGAATTTCAGTGCACCAGGCACTAGAGCATAGGTACTTTTCTTCTGCTCCTCTGCCTTCAGATCCAGACAAGCTCCCTAGACCTGCTCCCAAGAGGGAATCTAGGGTTTCTGATTTCAATTCACAGGAGGGTCCTACTATATTATCACCTCCTAGGAAGTCTAGGAGAGTGATGCCAGGACGTGATGGGTTTGAAGGAAATTCTCTGCAAGCAGATAAGGTTGATGCCAGTTTTGGTGATTTCAGACAGACAACTGATGATAATACTGGCAAGAATGAATCAGCTCCAATGTCTGTAGATTTTTCTATCTTTGGATTAAAACCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCATATTTGAAAAGAAAATTAGATCTAGAATTTCAATAG 1239 0.4092 MTDMDHSKKVADRYLKREVLGEGTYGVVYKAIDTHTGQTVAIKKIRLGKRKEGVNFTALREIKLLKELKDPNIVELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDTKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARMFGSPDRRFTHQVFARWYRAPELLFGAKQYGPGVDVWAAGCIFAELLLRRPFLQGTSDIDQLGKIFSAFGIPTAPQWPDMVYLPDYVEYQYVLAPPLRSLFPMATDDALDLLSKMFTYDPKTRISVHQALEHRYFSSAPLPSDPDKLPRPAPKRESRVSDFNSQEGPTILSPPRKSRRVMPGRDGFEGNSLQADKVDASFGDFRQTTDDNTGKNESAPMSVDFSIFGLKPPNRPTINSADRSYLKRKLDLEFQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02357 412 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gma05g02357 412 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Gma05g02357 412 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02357 412 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Gma05g02357 412 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02357 412 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02357 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gma05g02357 412 MobiDBLite consensus disorder prediction 296 378 - -
Gma05g02357 412 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Gma05g02357 412 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gma05g02357 412 MobiDBLite consensus disorder prediction 362 377 - -
Gma05g02357 412 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Gma05g02357 412 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02357 Gma-Chr5 44457871 44463320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02357 4 411 Core Cell Cycle Gene Families AT1G73690 74.265 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gma05g02357 Pkinase 3.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02357 K02202 - gmx:100786357 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02357 05 44457871 44463320 Gma05g02357 05 44457871 44463320 ECH
Gma05g02357 05 44457871 44463320 Gma08g00487 08 4047066 4051106 GST
Gma05g02357 05 44457871 44463320 Gma07g00902 07 9815594 9820182 PCT
Gma05g02357 05 44457871 44463320 Gma09g01654 09 42077046 42082165 PCT
Gma07g00902 07 9815594 9820182 Gma05g02357 05 44457871 44463320 PCT
Gma09g01654 09 42077046 42082165 Gma05g02357 05 44457871 44463320 PCT