Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02344 ATGGGGAAGAAGAAGAAGAGAGTTTCCTCGAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTTCACAAGGAATCCGTCACTAAGGTGCCCAATGCAAAGCCTGGTAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTTCGCGACCAGCCTTGCCCACGATGCCACCAGTTTATAATCCAGCTGTACCTGTGCCTCCAAATGCTTGGGTGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGTTGTTTCAGTTCCTCCTGCTGCCCCATACACACAGCAGCCATTATTCCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCAACTGCTCCTGCCCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCGCAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACTACTCAAAGTTCTGCATTTTCTGCTCCACCCCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTTCCTGTTGATACACATTTGAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGGCTGGTCGTATGGCATTTTAG 1116 0.4892 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMIPPPLGTGYPSRPALPTMPPVYNPAVPVPPNAWVVPPRPQPWFSQPPVVSVPPAAPYTQQPLFPVQNVRPPLPATAPALQTQITPPGLPTSAPVPVSQPLFPVVGNNHTTTQSSAFSAPPLPSSVPSVTPVMSTNVPVDTHLSSNSSVTSSYQAIGVPGGAASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02344 371 Gene3D Classic Zinc Finger 1 66 - -
Gma05g02344 371 SMART c2h2final6 12 35 IPR013087 -
Gma05g02344 371 SMART c2h2final6 36 59 IPR013087 -
Gma05g02344 371 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Gma05g02344 371 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Gma05g02344 371 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 371 - -
Gma05g02344 371 PANTHER ZINC FINGER PROTEIN 207 1 371 - -
Gma05g02344 371 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02344 Gma-Chr5 44363669 44366560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02344 1 351 C2H2 Transcription Factor Family AT1G30970 63.736 2.87e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g02344 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02344 - - gmx:100789368 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02344 05 44363669 44366560 Gma08g00473 08 3927735 3931195 GST