Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02324 ATGGCCCAAGTTTCTTCCTTCGAGAAGGTTCAGTATCAATTCCCTGAAAAGATTAGGGTCCTTGTCGTTGATAATAACCCCACAGATCTTGACTTCATCAAGCAAATATGCAATCTATGCAATTATGAGGTTAGCACATGCACTGAATCTACACAAGCATTGAATCTTGTGCTGGAAAGAAAAGATTGTATTGATTTGATACTCATCGAGGTTCATATGCCAACCATGAATGGCTATGAATTCCTTTACCGTGCCAGCAAGGAAATTGATGTTCCAGTTATTGTGATGTCTCTTGATCACAGCAACTATACTGTGACGCGGGCTGTTCAACTTGGGGCTTGTGATTTTTGGGTTAAACCTTTGCGTTATTATCAATTCAAGAATATGTGGACACATGTTTTAAGGAAAAGCCTGAAGGAAAATAACATACAAACAAAAGATTATGTTGGCAGCTTGGAAGATGGTGAGCGAAGCAGAAAACGGGGCAAGGATAATTCTGAATTTGGTTCTTCTTCTGTTGTTAGAGACCAAAGCAATAGCAGTTCCAAGGAAGCTGAAGAATCAAAGCATCGTGTTTCCTCAATGAAGAAGCCCCGTGTAGTATGGATAGCGGAACTGCATAGTAAATTCGTCAATGCTGTCAAAAAACTTGGCCTTCATCAGGCTGTGCCAAAGAGGATTGTTGAAGAGATGAATGTCCCTGGTTTGACTAGAGAGAATGTTGCTAGTCATTTACAGAAATATAGAGATTATTTGAAGAGAAAATCTGAAATGAAAGAGACACAGACACAGGAACACACCGAGATGCAATTGCCTAACATGGTTCCAGGGACTACAGAATCCAGGTCCATAAGGACTCTTGCAGATCCATCTGTATATGGAGCACAGCCCCCATCTAATGCGAATGTGTCAGTTGGTGCAATGCAGCAGTCACTGATCCATCAACAAATGATGATTTCTGGAAATCCAGCTTCTTCCGTCTCTAGGAATATTGATTACGCTCAATCTAGTAATCCTAATCCACTCGGATTTCTTCAAATCCATGATGGAAACACCCTTAATCAGTATACTGCTACAGAAGCTTCCATTTCCCAACAGCTTCAAAACTCAAGTTTGACAAGTGGTGCTGCATCATCAGTGTCTCCCTATGCATATGGTTCTACATCACCCATTCTTTCACTCAGTCTAGGGCTTCCTAACACATCAGCAACTGGTCTTAGTAACCAAAATTCCTCCACAGATGTTGTTGATAACACAAAAAACGAGGATCACTGA 1275 0.4094 MAQVSSFEKVQYQFPEKIRVLVVDNNPTDLDFIKQICNLCNYEVSTCTESTQALNLVLERKDCIDLILIEVHMPTMNGYEFLYRASKEIDVPVIVMSLDHSNYTVTRAVQLGACDFWVKPLRYYQFKNMWTHVLRKSLKENNIQTKDYVGSLEDGERSRKRGKDNSEFGSSSVVRDQSNSSSKEAEESKHRVSSMKKPRVVWIAELHSKFVNAVKKLGLHQAVPKRIVEEMNVPGLTRENVASHLQKYRDYLKRKSEMKETQTQEHTEMQLPNMVPGTTESRSIRTLADPSVYGAQPPSNANVSVGAMQQSLIHQQMMISGNPASSVSRNIDYAQSSNPNPLGFLQIHDGNTLNQYTATEASISQQLQNSSLTSGAASSVSPYAYGSTSPILSLSLGLPNTSATGLSNQNSSTDVVDNTKNEDH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02324 424 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Gma05g02324 424 Pfam Response regulator receiver domain 20 122 IPR001789 GO:0000160
Gma05g02324 424 Gene3D - 194 255 - -
Gma05g02324 424 CDD REC_typeB_ARR-like 20 134 - -
Gma05g02324 424 Pfam Myb-like DNA-binding domain 200 249 IPR001005 -
Gma05g02324 424 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gma05g02324 424 MobiDBLite consensus disorder prediction 402 416 - -
Gma05g02324 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 253 IPR017930 -
Gma05g02324 424 SUPERFAMILY CheY-like 16 142 IPR011006 -
Gma05g02324 424 SUPERFAMILY Homeodomain-like 195 254 IPR009057 -
Gma05g02324 424 MobiDBLite consensus disorder prediction 402 424 - -
Gma05g02324 424 MobiDBLite consensus disorder prediction 150 166 - -
Gma05g02324 424 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 335 - -
Gma05g02324 424 SMART REC_2 18 130 IPR001789 GO:0000160
Gma05g02324 424 Gene3D - 16 149 - -
Gma05g02324 424 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 335 IPR045279 GO:0009736
Gma05g02324 424 MobiDBLite consensus disorder prediction 149 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02324 Gma-Chr5 44196072 44198089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02324 13 263 Response Regulator Gene Family AT2G25180 39.844 5.59e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma05g02324 Response_reg 2.4e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02324 - K14491 gmx:102670418 828.55