Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02323 ATGGCCAAAATTCCAACTCAGGAGAAGGTTCCCAATCAATGTCCTGTCGTTCTTAGGGTCCTTGTCATTGATCATGATTCAAATGTTCTTGAAAACGTTAAGCAAATGTGCAATGGATGCCATTATGAAGTTATCACATACTCTAATGCTCTACTTGCATTGAATCATGTACGGAGAAACAAAGAAGGGATTGATCTGATACTCATTGATGTTGGTATGCCAAACTTGGATGACTATGAATTGGTCAAGGAAATCCGCAAAGAAATCGACGTTCCTTTTATCGTGATGTCATTCGATGATTCTAGGAGCAGTAGGATGGAGTCTATTAAACAGGGGGCTTGTGATTATTGGAAAAAGCCTTTTCATGAGGATCAAGTTAGGAATATGTGGGTGCATGTTGCTAGGAAAGCCTGGAATGATAATAAAGTAGATATAAAATGTGGCAGATTGGAAGATAATGATAAGAGAAAACGGGAGGAAAATGATTCTAAAGCAACAAGAGGAGGAGTCAAGAGGGGCAGGGAGCCAAAAAGGGTCAATGCAGGCACATCATCAAAGAGGCAACGTATAGTATGGACAGACGAACTGCATAACAAATTTCTCGATGCTGTCAGCCAACTTGGGGACATTAACACTGCTGTGCCAAAAAGAATTCTTGAACTGATGAATGTCCCCGGTTTGACAAGAGAGCAAGTTGCTAGTCATTTGCAGAAATATAGACATCAGCTTCTGAAGAATAATTCTAACGAAGTGAAAATGCAACAAAAGAATGGGGAGCCATTGGCAACTACAAAACCTGCAAGACTTGAGGATCAAGCTTTTGCTGTTACTGGCCGTGTTCCTTGTGAGATGCCAATAGAGGAGCAATGGCCTAACCATCCTGGTCCCGGAGTGGAACAACAGGGAACATCTTATGGTCATCATCCTCCTCTTAACATTGGCAATGCCGAAACAAGAATTCCTCAGTCCATGATCATGAATGTAGATGAAGAATCTGGATATAGAGTATGGTCTCCATCAGCTGATACAATGAGACAACTGAGTATTCAGGATAACAATGCGCTGACGATGGTGGATACATTGCACTTGCAGCATCGGCAGCAAAGACAGGAGCCACTTATAATGCATCCTCCTTCAGTGAACTTGCATCCATCTTGCATCCTGCAGGTGTCTGAAGACTCCCCCATTTTCCACGGCTATACTACTccagcaccagcaccagcaccagcaccagcaccaCCAGCTTTTCATGCTGCTGCAAATACACTTGTTCCCTATGTCTCTGGATCCAGTGATTCACTCTATCAGCAGCCTCCTCTTGTGAATTTTGGATATGATGACAAACAAATGTACATTCCAGGGACACCTCGGGGACATCAAATTAAAGAATCTGCAGGCGACGAGGATCACGATACTCTTGTAGACATATATATGTCCACCAATACAGGTGGCGACGACGTTGATGAAGCAGCCGCATAA 1479 0.4178 MAKIPTQEKVPNQCPVVLRVLVIDHDSNVLENVKQMCNGCHYEVITYSNALLALNHVRRNKEGIDLILIDVGMPNLDDYELVKEIRKEIDVPFIVMSFDDSRSSRMESIKQGACDYWKKPFHEDQVRNMWVHVARKAWNDNKVDIKCGRLEDNDKRKREENDSKATRGGVKRGREPKRVNAGTSSKRQRIVWTDELHNKFLDAVSQLGDINTAVPKRILELMNVPGLTREQVASHLQKYRHQLLKNNSNEVKMQQKNGEPLATTKPARLEDQAFAVTGRVPCEMPIEEQWPNHPGPGVEQQGTSYGHHPPLNIGNAETRIPQSMIMNVDEESGYRVWSPSADTMRQLSIQDNNALTMVDTLHLQHRQQRQEPLIMHPPSVNLHPSCILQVSEDSPIFHGYTTPAPAPAPAPAPPAFHAAANTLVPYVSGSSDSLYQQPPLVNFGYDDKQMYIPGTPRGHQIKESAGDEDHDTLVDIYMSTNTGGDDVDEAAA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02323 492 CDD REC_typeB_ARR-like 20 134 - -
Gma05g02323 492 Gene3D - 183 246 - -
Gma05g02323 492 SUPERFAMILY CheY-like 18 140 IPR011006 -
Gma05g02323 492 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
Gma05g02323 492 SMART REC_2 18 130 IPR001789 GO:0000160
Gma05g02323 492 MobiDBLite consensus disorder prediction 155 186 - -
Gma05g02323 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 244 IPR017930 -
Gma05g02323 492 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 385 IPR045279 GO:0009736
Gma05g02323 492 Gene3D - 17 147 - -
Gma05g02323 492 Pfam Myb-like DNA-binding domain 192 240 IPR001005 -
Gma05g02323 492 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gma05g02323 492 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 9 385 - -
Gma05g02323 492 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Gma05g02323 492 MobiDBLite consensus disorder prediction 155 182 - -
Gma05g02323 492 SUPERFAMILY Homeodomain-like 185 243 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02323 Gma-Chr5 44190089 44192302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02323 9 257 Response Regulator Gene Family AT4G31920 38.554 5.45e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma05g02323 Response_reg 6.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02323 - K14491 gmx:121174869 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02323 05 44190089 44192302 Gma08g00451 08 3751675 3753841 GST