Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02310 ATGTGTTCGCTGACCCAGTTGCGTCCGCTAACATGCGCCGCTTCCGCACCGGACCTCATCAAGTGGGTAGCCAGAGAAGGTGGCTTCGTGCACCGCGCGGTCAAAATAGCACAGCTCGACTCCTCCAATGGACTGGGCCTAGTGACCAAGGAGGAAATTCCACGTGGCAAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGATCTTTCTGGTGGCCATATATTACCAATCTCCCCGAAACATACACTGTGCCGATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCTCTTCTTCATCAGGTAAACAAAAGGTGTCGATTTCTTCTTGATTTTGAGAGAGAAGTCAAGCGTGCTTTGGTAAGTCTTACACCAGATAAGCATCCTCTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTATCATCTAGAGCATTTCGATTGTATGGTGAAAAGGATCCCAATGGGATACGCATTGACGTACCGATGATGCTCCCCCTAATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAAGAACAAGATACCAGTGACTCGAAGATGAAAGTTGTGGCCGAGACAGCAATTAAAGAAGATGATCCCCTGTTACTCTGCTATGGCTGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGATGCACTCAAACCCTTATGATTGTACTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACAGCAGCTGGAGTTTCTTCGCCAAATTTCTCAACACCTGCTCCATGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGTTGGCTGCATTGAGGGTAATTCTTTCAACTAATGTGGAAACTATGCAGAAGTATGACCTCAGCATACTCCAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGAGATAGCTGTATTTCGCACCCTAATTGCTTTGTGTCATTGCACTGGGACACTTTCCCACCAAAATAATGGATGA 1116 0.4543 MCSLTQLRPLTCAASAPDLIKWVAREGGFVHRAVKIAQLDSSNGLGLVTKEEIPRGKELWAMKLGLKLLQERAKVGSFWWPYITNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEREVKRALVSLTPDKHPLGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGIRIDVPMMLPLIDMCNHSFNPNARIVQEQDTSDSKMKVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVMHSNPYDCTELKYDGALLDAASTAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQETVEGRLLAALRVILSTNVETMQKYDLSILQSLDAEAPLGVANEIAVFRTLIALCHCTGTLSHQNNG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02310 371 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 238 360 IPR036464 -
Gma05g02310 371 SUPERFAMILY SET domain 17 246 IPR046341 -
Gma05g02310 371 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 59 361 - -
Gma05g02310 371 Gene3D set domain protein methyltransferase, domain 1 4 241 - -
Gma05g02310 371 Pfam SET domain 44 228 IPR001214 GO:0005515
Gma05g02310 371 PANTHER F21J9.27 59 361 - -
Gma05g02310 371 PANTHER F21J9.27 3 59 - -
Gma05g02310 371 Pfam Rubisco LSMT substrate-binding 278 360 IPR015353 -
Gma05g02310 371 SMART set_7 32 234 IPR001214 GO:0005515
Gma05g02310 371 ProSiteProfiles SET domain profile. 34 228 IPR001214 GO:0005515
Gma05g02310 371 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 59 - -
Gma05g02310 371 CDD SET_LSMT 33 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02310 Gma-Chr5 44107530 44110060 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma05g02310 SET 4.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02310 - - gmx:100813630 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02310 05 44107530 44110060 Gma08g00439 08 3669280 3672438 GST