Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02286 ATGGAGAGAGATTTCATGGGTCTCAACTTGAAAGAACCACTAGCTGTGGTGAAGGAGGAGATGAACAATGATGGCTGCAAAAACTCTGGCATGTTTCAACTTTTGTGCTTCAAAAAAGGTCGGATTGCACAGTGGCCATTCTCGAACAAAGTATCTGCCCTTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAATACAGTGTCTGATACCTTATCATCTTCTGGGTTTATGTCTATCTTAAGTCAAGAAGCATTTGACACTAGTCAGAAACGCTCTGCTGGTGAACCCCAGAAGTCTTTCAATCATGATGGGCAAGGTGACCTTCATTTTTCGCTGACTTCATATCCTGTACAACATGATGTGAATCATCCTCATGATGTGAAGATGTTTTCAGTTCCAAATCAAGCAATTTCAGTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTGCAGCTGCTGGTCAGAAGCCGTTACTTGGGGGAATACCTGTTACCACATCTCATTCAGTTCTTCCCTCTGCTGTTGCTGTTGCTGGAATGACCGAATCATGTAACAGTGTGAAACCATCTGCTCAACTTACCATCTTCTATGCTGGTACTGTCAATATCTTTGATGATATCTCCACTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAATAGCTTATCTGCAGCTTCTAACATGGCACAGCCAAATGTTCAGGTGCCTATCTCGAAGTTGGGTGCTGGTGCTGGTGTGCCTGTGAGTCAACCTGCAAATACATCACCTGGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACCGGTGTACAGTCAGGGAGTGGCTTAACTAGCACTGATGAATTTCTGGCTGCTAAAACAACTGGAGTTCCCAACACTCCTATTTGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCAACCACTATGTTGACATCAGCTGTACCTCAGGCCCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAACGCAAAGAAAGGGTGATGAGTGCAGCACCATACAACCTCAACAAGAAGTCTGAAGAGTGTGCCACTGCAGAATACGCTGGAACAAAAACGAGACAACCTCGGATTCGTATCGAATCGTGCGATACGTATCGTGAATCGAAGCAAATGAAGATTGTTTCAGTTGCAGTTAGGTCAATCAGTGCTAATTTGCCAAACCAGTTTCATCAGAGCCACTTGCTCAGAAGTCTTTCCACTTGGAAATTTACAGCAGATAATGCAACTGGTAATCGGCAGTTTAACAATTCAGAATCTCCTGAGGAGTCTGAGCAGTTTGGTGGAAATCGTGGGAAATATGCCCAACTTGATTCCATATTTGAAAAGTTTAATCAACAGGGAATGGCAAGACAAAGACCTGGTTCAGTAAATGGTGCTAGTTCTGAGAGGATGCACGATCTAGAAGAAACTTATGACACATTAACTGATGGAATGGATGGAAAACTGATGAATGCTGCCACATACTTTGAATTTGATGAGGATGAAATTGAAAAAGAAGATTATGCATTTCGATATGATGCCAATTTTCCACTTGGTTCAAAATATGATGTAAAGGATCTGGATCTTACAAAACCTGGTGTACACAAGCCCCCCAAAAGGGAGGAATTCACAACAACCACCAAAGAAGTTCTTAGTAAAGCAGATTTCAGGAACGTTAGATTCTTGGCAAAGTTCATAACAGAGGCTGGAATTCTTATCAAGAGAAGCCAGACTGGCATTAGTGCAAAGGCTCAAAGGAAGGTCGCTAGGGAGATAAAAACTGCACGAGCATTCGGCTTGATGCCCTTTACAACAATGGGTACGAAGTCTTTTGTTTTTGGGAGAACTATGCAGAATCTTGATGAAGACTTTGCATATCAAAGTAGGGTGGCGGATATGGATGGGGAACCTGATATGGAAGGAGACCATGCTTAG 1956 0.4279 MERDFMGLNLKEPLAVVKEEMNNDGCKNSGMFQLLCFKKGRIAQWPFSNKVSALPHLMSFKASQDDKTKNTVSDTLSSSGFMSILSQEAFDTSQKRSAGEPQKSFNHDGQGDLHFSLTSYPVQHDVNHPHDVKMFSVPNQAISVSLGNPFLKNHFAAAGQKPLLGGIPVTTSHSVLPSAVAVAGMTESCNSVKPSAQLTIFYAGTVNIFDDISTEKAQAIMLLAGNSLSAASNMAQPNVQVPISKLGAGAGVPVSQPANTSPGSGLSSPLSVSSHTGVQSGSGLTSTDEFLAAKTTGVPNTPICNVEPPKVVSATTMLTSAVPQARKASLARFLEKRKERVMSAAPYNLNKKSEECATAEYAGTKTRQPRIRIESCDTYRESKQMKIVSVAVRSISANLPNQFHQSHLLRSLSTWKFTADNATGNRQFNNSESPEESEQFGGNRGKYAQLDSIFEKFNQQGMARQRPGSVNGASSERMHDLEETYDTLTDGMDGKLMNAATYFEFDEDEIEKEDYAFRYDANFPLGSKYDVKDLDLTKPGVHKPPKREEFTTTTKEVLSKADFRNVRFLAKFITEAGILIKRSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVFGRTMQNLDEDFAYQSRVADMDGEPDMEGDHA 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02286 651 PANTHER PROTEIN TIFY 7 13 366 - -
Gma05g02286 651 Pfam tify domain 195 225 IPR010399 -
Gma05g02286 651 Pfam Jas motif 323 347 IPR018467 -
Gma05g02286 651 Gene3D Ribosomal protein S18 551 613 IPR036870 -
Gma05g02286 651 MobiDBLite consensus disorder prediction 423 438 - -
Gma05g02286 651 Pfam Ribosomal protein S18 560 608 IPR001648 GO:0003735|GO:0005840|GO:0006412
Gma05g02286 651 ProSiteProfiles Tify domain profile. 191 226 IPR010399 -
Gma05g02286 651 MobiDBLite consensus disorder prediction 423 443 - -
Gma05g02286 651 SMART tify_2 191 226 IPR010399 -
Gma05g02286 651 TIGRFAM S18: ribosomal protein bS18 550 611 IPR001648 GO:0003735|GO:0005840|GO:0006412
Gma05g02286 651 MobiDBLite consensus disorder prediction 254 284 - -
Gma05g02286 651 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 366 IPR040390 -
Gma05g02286 651 PRINTS Ribosomal protein S18 family signature 586 600 IPR001648 GO:0003735|GO:0005840|GO:0006412
Gma05g02286 651 PRINTS Ribosomal protein S18 family signature 568 578 IPR001648 GO:0003735|GO:0005840|GO:0006412
Gma05g02286 651 PRINTS Ribosomal protein S18 family signature 600 610 IPR001648 GO:0003735|GO:0005840|GO:0006412
Gma05g02286 651 SUPERFAMILY Ribosomal protein S18 541 611 IPR036870 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02286 Gma-Chr5 43888872 43898916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02286 45 356 Tify Gene Family AT3G17860 35.417 2.09e-33 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gma05g02286 Ribosomal_S18 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02286 K13464 - gmx:100807043 681.019