Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02285 ATGGACGACGTCAAAGGTAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCCTCTTCCTCATCCGGCAAATTCAAGGGCCAAGGTAGAGTCCTCGGTTCTTCTTCTTCTTCTTCTCCCACTAATTCCAATCCTACCCCTCGCCCCCACCCTAATTCGCAGAAACCCTCCTCTTCAGCCACACCCTATCCCAAACCCTCACCCCAGAAAACGGACCCATATAGAACCACCGAGAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCACAAAATGGGTACTCGCTGGACGTCTTTGAATGCCCTATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACATGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAGGTGATGATGGAAATGGGGCCTCAGAGAGTGATGGTGGGTCTAATACTAATAGTGATAGTGAATTTGAGGTTTGTGTTGAGACTTACAGTTCAGGGAAGCCATCTGAAGGATCGGTCGATGTTGTTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGCGAATGTGAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATAAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGATTTGAACTCCGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCCACAGAGGAGCAAATAAAAATCATTAAGAAAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCAAAGAGAGATGATTCGCCGTCTGCAACTTCTGCTGAGATGGGTCCAAAGGCTGAACCAAAGCTGGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGGGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAGCCTTTCAGCCGAAGAGGTCAGTAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCAGATTCTCAGCTTTTAATCCCTAAGTCACTTAGAGAAAAACAAGCAAAAGCTTCCAGGAAGAGATACACTAAAGCTATTATCAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTGCTGCTATCTACAAGTTTGTCTGCTCGGCATTAAAAGAACCAGGCTTGGAATTTGAGCTAATGCATCCGGTACTTATCCAACGACGTGTGATCCCCCATTTTCCAAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATAAGTGAACCACTTGTAAATGGTTAA 1398 0.4492 MDDVKGKVKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSSPTNSNPTPRPHPNSQKPSSSATPYPKPSPQKTDPYRTTEKPRKDDGFDPFDSLVTNSNRSQNGYSLDVFECPICKQPFRSEEEVSAHVDGCLNNPVERGGDDGNGASESDGGSNTNSDSEFEVCVETYSSGKPSEGSVDVVLKLLRNIGREPANVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEVPTEEQIKIIKKAIVLLESQLVQQGPPKRDDSPSATSAEMGPKAEPKLVDRQVKVFFAVPERVAAKIELPDSFYSLSAEEVSREAELRRKKIADSQLLIPKSLREKQAKASRKRYTKAIIRIQFPDGVVLQGVFAPWEPTAAIYKFVCSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02285 465 Gene3D - 348 441 - -
Gma05g02285 465 SUPERFAMILY PUG domain-like 174 260 IPR036339 -
Gma05g02285 465 MobiDBLite consensus disorder prediction 264 284 - -
Gma05g02285 465 CDD PUB 166 260 - -
Gma05g02285 465 MobiDBLite consensus disorder prediction 15 45 - -
Gma05g02285 465 SUPERFAMILY Ubiquitin-like 327 438 IPR029071 -
Gma05g02285 465 Pfam PUB domain 176 251 IPR018997 -
Gma05g02285 465 Gene3D - 157 258 - -
Gma05g02285 465 MobiDBLite consensus disorder prediction 1 102 - -
Gma05g02285 465 Gene3D Classic Zinc Finger 107 137 - -
Gma05g02285 465 MobiDBLite consensus disorder prediction 74 90 - -
Gma05g02285 465 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 464 - -
Gma05g02285 465 SMART PGNneu 177 244 - -
Gma05g02285 465 MobiDBLite consensus disorder prediction 133 161 - -
Gma05g02285 465 Pfam UBX domain 355 405 IPR001012 GO:0005515
Gma05g02285 465 ProSiteProfiles UBX domain profile. 354 438 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02285 Gma-Chr5 43877798 43881227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02285 1 386 C2H2 Transcription Factor Family AT2G01650 57.250 3.84e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma05g02285 UBX 0.00014 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02285 K14011 - gmx:100807576 887.871