Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02280 ATGGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGCTTCTGGACATGTCCACCGATGAACTCGTGAAGATGTTCAGTGCTCGCGCACGTAGAAGGTTCCAGAGAGGCCTCACCAGAAAGCCCATGGCCTTGATCAAGAAGCTTCGCAAAGCGAAAAGAGAAGCTCCACCAGGTGAGAAGCCAGAACCTGTCCGCACCCACCTCCGCAACATGATTATTGTGCctgagatgattggtagcattattggagtgtacaatggcaagacctttaatcaggttgaaatcaaacctgagatgattgggcattatctggcagagttttctatttcatacaaacccgttaagCACGGGAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTTATTCCTCTTAAGTGA 468 0.3974 MADVEVDVAAAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02280 155 SUPERFAMILY Ribosomal protein S19 58 139 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 Pfam Ribosomal protein S19 53 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 Gene3D 30s Ribosomal Protein S19; Chain A 12 155 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 155 - -
Gma05g02280 155 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 ProSitePatterns Ribosomal protein S19 signature. 108 132 IPR020934 GO:0003723
Gma05g02280 155 Hamap 30S ribosomal protein S19 [rpsS]. 51 144 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 TIGRFAM uS19_arch: ribosomal protein uS19 22 155 IPR005713 GO:0003735|GO:0006412|GO:0015935
Gma05g02280 155 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 10 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 PRINTS Ribosomal protein S19 family signature 88 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 PRINTS Ribosomal protein S19 family signature 108 120 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gma05g02280 155 PRINTS Ribosomal protein S19 family signature 120 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02280 Gma-Chr5 43827037 43828682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02280 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.452 2.90e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02280 K02958 - gmx:100499781 290.812