Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02278 ATGTCTACTTCAAAGAGCGTCAGCAGTTCTAGTGAAGATGACAATGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAATTTGCTCTCCCAATATATTTCTAGTCATGGAGAAGGGCGATGGAATTTGCTAGCTAAACGTTCAGGATTAAAGCGAACTGGGAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTAAAACGGGGAAATTTAACCCCACAAGAGCAACTTATAATCCTCGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAAAATttgccaggcagaacagacaatgaaatcaagaactattggagaactaggatTCAGAAACAGGCAAGACATTTGAAAATTGACACTGACAGCAGAGAGTTTCAGGAACTTGTTAGGCGTTTCTGGATGCCTAGATTGCTTCAAAAAGCCAAAGAATCATCTTCTTCAGCCATGTCAATTCAAAACCAGGCAACTCCTATGCCTTTTGATGGTGTTTCTCAGCATTCAACTGTTGGGACCATACCATCACATTCACACACCCCTTGGCAGGGACCTTGTATGAATGAAGCTGGTCCCACTTACATGGACCAACATGAGCAGAACTCAGACTCTGAACACAACAATGGTTCATGCATCTCCTTGTCTGAGTCAGCAAATTTTCCAAAAGTGCCTCAGCATTTTGGACGCACCACCATCACCCAATATCATGCCTTGAATAACAATGACTTTGGCACCTTCACATATGACGGCTACAATGTAAGCAACAATGTCTATGAGATGGACAACTTCAAAACGCCTACTACAAGGGTGGCTGAGGATGCGCAATACCCAACTGGTGATTGTCAAATGGTAGGAAGCAATTGGGTAAACAGCGATTTTGCATGTAACATGTGGAACATGGATGAATTGTGGCAATTTAGCAAGTTACAAAAATAA 954 0.3994 MSTSKSVSSSSEDDNELRRGPWTLEEDNLLSQYISSHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQLIILELHSKWGNRWSKIAQNLPGRTDNEIKNYWRTRIQKQARHLKIDTDSREFQELVRRFWMPRLLQKAKESSSSAMSIQNQATPMPFDGVSQHSTVGTIPSHSHTPWQGPCMNEAGPTYMDQHEQNSDSEHNNGSCISLSESANFPKVPQHFGRTTITQYHALNNNDFGTFTYDGYNVSNNVYEMDNFKTPTTRVAEDAQYPTGDCQMVGSNWVNSDFACNMWNMDELWQFSKLQK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02278 317 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gma05g02278 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Gma05g02278 317 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Gma05g02278 317 SMART sant 18 68 IPR001005 -
Gma05g02278 317 SMART sant 71 119 IPR001005 -
Gma05g02278 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Gma05g02278 317 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 4 312 - -
Gma05g02278 317 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Gma05g02278 317 MobiDBLite consensus disorder prediction 198 219 - -
Gma05g02278 317 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Gma05g02278 317 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gma05g02278 317 Gene3D - 19 71 - -
Gma05g02278 317 MobiDBLite consensus disorder prediction 200 219 - -
Gma05g02278 317 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 312 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma05g02278 317 CDD SANT 76 115 IPR001005 -
Gma05g02278 317 Gene3D - 75 118 - -
Gma05g02278 317 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02278 Gma-Chr5 43819126 43820924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02278 14 158 MYB Transcription Factor Family AT1G68320 73.793 7.35e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma05g02278 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02278 K09422 - gmx:778042 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02278 05 43819126 43820924 Gma09g01694 09 42591307 42592520 ECH
Gma05g02278 05 43819126 43820924 Gma05g02278 05 43819126 43820924 ECH
Gma05g02278 05 43819126 43820924 Gma08g00405 08 3412345 3414081 GST