Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02275 ATGGAAGAAAAGCTACCTCCTGGGTTCAGGTTCCATCCCACAGACGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCCGATATTAGCTTCACATCCAAAGCTGTAGCAGTTGTTGATTTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGCGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACCAACCGAGCTACTGAATCAGGGTATTGGAAAACCACAGGAAAAGACAAGGAAATATTTGGGGGTGGAGTTTTGATAGGGATGAAGAAAACCTTAGTCTTTTATATGGGAAGAGCTCCGAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTTGAAAACAAGCAACCCTATTCTTCCAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAAAAGAGCTCAGCACCAAAGAAACCACAGCAGACATCATCCTCCCAACCATCTCAAGAGTCTCCTATCTCAATGGTCAATGAATTTGGTGATGTCGACCTACCAAATCTTAATAGCATTGCAAATTCATCCAGTAGCTTCACCAACAATATTGCATACAATGGTGATCATCCTAGCAATGTTAACACCAATAATATGAATTTGACCATGAATTGGCCTTCTTCAACTGAGCTGGTTCCATCTCTCCCATGGCCTTCTGGATTGCTGAATCCTAACCTTTCTGTGAATTCATTGCTTCTCAAGGCATTGCAACTTAGAAATACTTATCAACAAAGAGAAACTACGACCAGTACTAGTGATCATCACTTTGCAACATATGTTCCTCAAGGATTTTCTCATCATAATATTGGAACTGATAAACATCACTTCCCCCCAAATCTCAGTGCTTCTTCTTCTTCCAAAGCTTTAGAATCTTGTGTGCCGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 966 0.4151 MEEKLPPGFRFHPTDEELITYYLLRKVSDISFTSKAVAVVDFNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLENKQPYSSKEEWVICRVFQKSSAPKKPQQTSSSQPSQESPISMVNEFGDVDLPNLNSIANSSSSFTNNIAYNGDHPSNVNTNNMNLTMNWPSSTELVPSLPWPSGLLNPNLSVNSLLLKALQLRNTYQQRETTTSTSDHHFATYVPQGFSHHNIGTDKHHFPPNLSASSSSKALESCVPQQEQPFNMDSIW 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02275 321 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 259 - -
Gma05g02275 321 SUPERFAMILY NAC domain 3 150 IPR036093 GO:0003677|GO:0006355
Gma05g02275 321 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gma05g02275 321 MobiDBLite consensus disorder prediction 292 321 - -
Gma05g02275 321 PANTHER BNACNNG63190D PROTEIN 2 259 - -
Gma05g02275 321 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
Gma05g02275 321 MobiDBLite consensus disorder prediction 287 321 - -
Gma05g02275 321 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02275 Gma-Chr5 43788174 43791744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02275 1 321 NAC Transcription Factor Family AT3G18400 56.637 9.04e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma05g02275 NAM 4.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02275 - - gmx:100775645 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02275 05 43788174 43791744 Gma05g02275 05 43788174 43791744 ECH
Gma05g02275 05 43788174 43791744 Gma08g00399 08 3366570 3369859 GST
Gma05g02275 05 43788174 43791744 Gma07g00835 07 8900313 8903291 PCT
Gma05g02275 05 43788174 43791744 Gma09g01701 09 42664180 42667066 PCT
Gma07g00835 07 8900313 8903291 Gma05g02275 05 43788174 43791744 PCT
Gma09g01701 09 42664180 42667066 Gma05g02275 05 43788174 43791744 PCT