Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02270 ATGAGAGACATGAAAGACGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCCTGCGACAGCTGCGTAAGCAGAAGAGCAAGGTGGTTCTGTGCAGCTGATGATGCTTTCCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCTTCCTCAAAAGTAACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAGCAAGCACTTTGCGCTGCAACAGCGTCTCAAAGACGAAGTTCTCTTCAACAACACCAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACAAGAACCGGTGGTTGTGGATAACGATGAGACGGAGGAGCAGATGCTGTGTCGGGTGCCCGTGTTCGACCCTTTTGATGTGAGAACCGATGACTTGGATAGTTTTTCTGACATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAGCCTACTTGATAAAGAAGACGATGAAATAAGTGCGTGTGTGGGAGGGGGAGAGGGAGAGGGAGAGGGAGTTCAAGGTGCAATGGTGAAGGTTAAGGATGAAGAAGAAATTGATGGTGATGTAGCGTGTTATCTGGAATCGGTTTTTGATGATGCCTTTCATTGGAATAACATTGAGTCTGTGCTGTCAGATGCACGGGAAGAGAAGGAGGGTGTGGTGGCGTGTGATGTAGGTGTCGGTGATGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCTCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGATTATGACTTCTCCTTGGGTTTGAGTGGTGTAGGTGGGGAAGTAAGAAGCTTAAGAGGGCACCTAGATGGTGGAAGAGAAGCAAGAGTGTCAAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA 1110 0.482 MRDMKDAGALGGKTARACDSCVSRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTHAWHSGFTRKARTPRHNSKHFALQQRLKDEVLFNNTSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDPFDVRTDDLDSFSDMDFAEFAADVESLLDKEDDEISACVGGGEGEGEGVQGAMVKVKDEEEIDGDVACYLESVFDDAFHWNNIESVLSDAREEKEGVVACDVGVGDEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFSLGLSGVGGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02270 369 Pfam CCT motif 314 356 IPR010402 GO:0005515
Gma05g02270 369 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Gma05g02270 369 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Gma05g02270 369 CDD Bbox1_BBX-like 17 60 - -
Gma05g02270 369 SMART bboxneu5 13 60 IPR000315 GO:0008270
Gma05g02270 369 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 362 - -
Gma05g02270 369 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
Gma05g02270 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02270 Gma-Chr5 43743008 43744891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02270 7 356 C2C2-CO-like Transcription Factor Family AT1G25440 43.972 4.48e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma05g02270 zf-B_box 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02270 - - gmx:100812563 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02270 05 43743008 43744891 Gma08g00395 08 3329419 3331437 GST
Gma05g02270 05 43743008 43744891 Gma07g00829 07 8833626 8844077 PCT
Gma05g02270 05 43743008 43744891 Gma09g01709 09 42725927 42728367 PCT
Gma07g00829 07 8833626 8844077 Gma05g02270 05 43743008 43744891 PCT
Gma09g01709 09 42725927 42728367 Gma05g02270 05 43743008 43744891 PCT