Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02264 ATGAACATTTGTGGTTGTTGGGTTTCATCAATGAAATTGCCCTTCCTCGGGTGGCGCTTTTCAAGGCCTTTTACCTCTCTCTGTTCTTCTTCTTTTTCGCCACGCATTATGACCATTCAAAGTTGTTCTTCTCCTTCTTCTTCAGCCTCCTTATCAACGTCAGAGTCGAAAGAGATGAAGAAGGAAGCTTCACCTTGGTTAATTGTTGGCCTCGGCAATCCAGGCAAAAAGTACGCTGCCACCCGCCACAATGTGGGCTTTGAGATGGTTGATACCATAGCTGAAGCTGAAGGGATATCTATGACCACTGTTTCCTTCAAATCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTGATCTTTGACGACTTGGATTTGCCTTTTGCTAAATTGCGGCTTCTACCAAAGGGTGGACATGGAGGTCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATTCTGGTTTTCCCCGTTTAAGAATTGGCATTGGACGACCTCCTGGGAAAATGGACCCTGTAGCTTTTGTTCTTCGCACCTTCACTAAACATGAAAGGGAAGAGTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGATTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAGAGCAAACAGGGCTATGTTTGAGCAAGTATTCATCCATTCTTTCAGAAAGCAGTTTCAGCACAATGAATTCGAACCTGATGCCTGGAATCTTCAGATCTGAAGGGCCCAACAGAAATCCCAAAACGCGGCATCAACGGGAAACTCGAAATGAAAAAGCCCTTTTTCACCCCTTCCCAACGCACGCCGTCTTTCCCTCTGTTGTTGGTGCAATTGATCAAATGGACATTGATGGAACTGCTGATGTTGATCAGAACTCAGGAGCTGACAAAAACAAGGGAAAATGCAAACTTAATGTAGGGTCTCAGTCACTAGGATACCGCAGAGACTATATGGAGGTAACACTTCAAAATATCTATCTATCTATCTGCTTGCTTAGGCTTTTAACTATTCTCATTTGTTTTGATGCTCATCAGGTGCTGTCACCATTGAAGAATGGAGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGCCTCCTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCCGAACCATGTTCCAACACTCAAGAACAGAGAGAATTCTGTCAACAGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCGTTGTTTTTGGCAAAGAATGCTGTTCTCACATCTTTTGCATCAGGGTGTGCTACCTCATTAGTTATTGATAGTGGTGGTGGATCAACTACTGATGTACCAGTACTGGATGGTTATGTTCTTCAAAAGTGTTTGGATAGGGGGGAGTATACTGGCTTCTCTTGGCTCCTTCCAGTAGATGTGGTTCTCCAAGTCCGAGTATGA 1584 0.4211 MNICGCWVSSMKLPFLGWRFSRPFTSLCSSSFSPRIMTIQSCSSPSSSASLSTSESKEMKKEASPWLIVGLGNPGKKYAATRHNVGFEMVDTIAEAEGISMTTVSFKSLFGKGFIGDVPVILAKPQTYMNSSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINHFKGNSGFPRLRIGIGRPPGKMDPVAFVLRTFTKHEREELNFTLQDGLEAVRILLLEGFDKSATFVNSAKKIEQTGLCLSKYSSILSESSFSTMNSNLMPGIFRSEGPNRNPKTRHQRETRNEKALFHPFPTHAVFPSVVGAIDQMDIDGTADVDQNSGADKNKGKCKLNVGSQSLGYRRDYMEVTLQNIYLSICLLRLLTILICFDAHQVLSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQREFCQQAAELMFEKYKVPALFLAKNAVLTSFASGCATSLVIDSGGGSTTDVPVLDGYVLQKCLDRGEYTGFSWLLPVDVVLQVRV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02264 527 Pfam Peptidyl-tRNA hydrolase 67 245 IPR001328 GO:0004045
Gma05g02264 527 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 78 91 IPR018171 GO:0004045
Gma05g02264 527 SUPERFAMILY Peptidyl-tRNA hydrolase-like 65 250 IPR036416 GO:0004045
Gma05g02264 527 Gene3D - 50 253 IPR036416 GO:0004045
Gma05g02264 527 Hamap Peptidyl-tRNA hydrolase [pth]. 65 243 IPR001328 GO:0004045
Gma05g02264 527 Pfam Actin 392 510 IPR004000 -
Gma05g02264 527 PANTHER PEPTIDYL-TRNA HYDROLASE 31 254 IPR001328 GO:0004045
Gma05g02264 527 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 171 181 IPR018171 GO:0004045
Gma05g02264 527 SUPERFAMILY Actin-like ATPase domain 389 483 IPR043129 -
Gma05g02264 527 TIGRFAM pth: aminoacyl-tRNA hydrolase 67 246 IPR001328 GO:0004045
Gma05g02264 527 CDD CRS2 65 254 - -
Gma05g02264 527 CDD NBD_sugar-kinase_HSP70_actin 396 500 - -
Gma05g02264 527 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 31 254 - -
Gma05g02264 527 Gene3D - 311 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02264 Gma-Chr5 43678070 43686646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02264 397 512 Cytoskeleton Gene Families AT5G09810 37.931 4.73e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02264 K01056 - gmx:100526866 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02264 05 43678070 43686646 Gma05g02264 05 43678070 43686646 ECH
Gma05g02264 05 43678070 43686646 Gma08g00388 08 3251629 3254081 GST