Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02260 ATGGATTTAGAAGAGAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTTCTTCAGCAGTTCCTAAAATGTGGTCCAAAGAAGGAACTTCTTCAATTGTGTTTTGACAAGGACAAAAAAAGCATTTCATCAAAAGGCAGAATGTCTGAAACTAAGTCAACCAGTAAGATAACTAAGAAACAAGACACGAAAAAAGTTTCTAGTTTCAGCCATCAGCCCCCTAGAAAGCAACCTCGGAAGGGTGAAAACCCTACTCGAATCATACCTCCTCTTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATTTGTAAAAATGCTGCTTGTAGGGCGGTTCTGTCTATGGATGACACGTTTTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTGCTCAAGGAGACTCCTGTGGGTTGTCTTGCCATATCAAATGTGCCCTTCAACATGAAAAGGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCGTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAGCAGCTAAATATAGCTAAGGATGCCCGGCGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGATGGAACCTCAAAATTCAAAGATTTGCATCAAACAGTACAAGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTTCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCATATTGCCAGTGATATACAGAAACTCTGCTCTCTTGCTATCGAGAAAGCTGATAGCTGGCTTGCCACTGTTCCCAATGTAAATTCAGATTCCACAGAGGGTTCTTTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCTTCAGCCAAAATCATTTTAATTGAAATGTCAAGTATATGTTCTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTTGGGATGAATCACCCACTAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGATACACGTGACTTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATTGAGATAATTAAAAACAATCCCTCTTCATCTGTTGCTATGAATAATGAAAAAGAGAACCTTCTAACTAGGGGTAATTCTTCGGCCTCCAAGATAGGGCCCAATGCCACAATGGAAGGCTATGGATTCAAGGTTCGAGACCTTGGAAAATTTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTGTGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGCTTAGAATTCCAGAAGCACAGTTGCCTTCAGTTTCACGAGGCCTGGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAACGGTTGCTCTTTGCTGCAAGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAGACCTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATGTGCAAGAAAAGGATAGCAAGCACAAACGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCTTGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACATGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCAACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATCGATGATCCAGTAAAGCTGGGGCATCAAATTAAGGGCATTTTTTAA 2103 0.4137 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGPKKELLQLCFDKDKKSISSKGRMSETKSTSKITKKQDTKKVSSFSHQPPRKQPRKGENPTRIIPPLDQSSDFGHSNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIKCALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSSKMARGIVSRLHIASDIQKLCSLAIEKADSWLATVPNVNSDSTEGSFPAACKFVFEEVTTSSAKIILIEMSSICSEEIKGYKLWYYKSWDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEIIKNNPSSSVAMNNEKENLLTRGNSSASKIGPNATMEGYGFKVRDLGKFLRLAWAQEQGYLEEFCCANVKNCCGQSEMVDKLRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMCKKRIASTNEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKHEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPVKLGHQIKGIF 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02260 700 MobiDBLite consensus disorder prediction 64 117 - -
Gma05g02260 700 Gene3D Immunoglobulins 315 417 IPR013783 -
Gma05g02260 700 CDD FN3 357 408 IPR003961 GO:0005515
Gma05g02260 700 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Gma05g02260 700 MobiDBLite consensus disorder prediction 11 37 - -
Gma05g02260 700 MobiDBLite consensus disorder prediction 574 589 - -
Gma05g02260 700 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Gma05g02260 700 MobiDBLite consensus disorder prediction 569 590 - -
Gma05g02260 700 PANTHER VIN3-LIKE PROTEIN 1 55 696 - -
Gma05g02260 700 SUPERFAMILY Fibronectin type III 333 409 IPR036116 GO:0005515
Gma05g02260 700 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 696 IPR044514 GO:0010048|GO:0040029
Gma05g02260 700 MobiDBLite consensus disorder prediction 64 89 - -
Gma05g02260 700 MobiDBLite consensus disorder prediction 12 37 - -
Gma05g02260 700 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02260 Gma-Chr5 43638153 43649106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02260 124 700 PHD Gene Family AT3G24440 46.441 2.60e-166 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02260 - - gmx:100816128 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02260 05 43638153 43649106 Gma05g02260 05 43638153 43649106 ECH
Gma05g02260 05 43638153 43649106 Gma08g00382 08 3216149 3219818 GST
Gma05g02260 05 43638153 43649106 Gma07g00805 07 8592447 8600920 PCT
Gma05g02260 05 43638153 43649106 Gma09g01741 09 42993383 42995881 PCT
Gma07g00805 07 8592447 8600920 Gma05g02260 05 43638153 43649106 PCT
Gma09g01741 09 42993383 42995881 Gma05g02260 05 43638153 43649106 PCT