Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02258 ATGATGCCATACTTGGGACATATCCATCTGGAACGTACTGTTAGAATAATTCTCCCATGCACTGAGCCACCGACTAAACCTGTCACTGCTCAGTGCTCACTTGCTCTCAACTTCATATGTAGCGACCTCAAGGAGCAAAACCCGTGCTTCACGCTAGTAATGGTAAACCGGAGTACCAGACAGCGCATTAAACTCAGCACCGATTCTTCTTCGTCTGCTGCAAATTCAGAAGTAGAGATGGCAAGTCGAGTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCGCACCAAATCGAAGATGCATTAACTGTAACAGCTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACACCGAGAGTTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGCACAGGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAGGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATATTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCAGCGGTGAGAGGACTTATGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCCATGAAAACAAGAGGACAGAGACTTATCACAGAAGCCCTTCATATGAGGACACACATGAACGTCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGTATATGATCAAGAAAATAGGCAATATGGTGATTACAAGAAAAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGAGAAGATAGATTTGGGGATGGATGGAAATTTGAAGATCATAGAATGTCTGATGGAAATCATAATGTGGAAAGTACTTCTCCTGAGCGAACCAAGGATCTGGATTCTTCCAGCCCACCTGCAGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACAGTGGACAGGCTACTAATGGCTCAGCACTCACACAGAGAACTTCATCTTCCAGTAGCTTAGCATCCAGCAATGGAACCCCTGCAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCTTCAGCAATTCCTCAAGCCCCGCAAACTACTGTGGCTAAACATGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCACCTCAGGGTCCTTCGAATATAAATCCACTTGAATCCATGCTGACACAATTGTCAGTACCAGTATCTTTACCTTCTCATGTTTCAAGAGCCCAAGGTGATTCCCATGTTGCAACAGCTAATTCTGGGAGCTGTGCGACAAGATTATTAATATTCAATGACTCTTCTGTTTCTCGTGCAGGACCTTTGACGGGGTCAGCTCTTACCACTACTGCTGCAGGAGCTCCAATTGTTAGCAGCTTCTCAACATTCCCAGACAGTGGTGCTTCAGTAACATCTTTTGGATTAACAACAGCATCAACTCTCAATAATGCAGGACAGTGGGCTACTTTGCAGTATCAGCAACAGCAACCTTTGTTCACTGCTGCTGCTAGTCAGCCTACTATTCAACAATCCACTCCACCAGTTGGTGGAGCTTTGAATAATCAGCCCTGGACTGTACCTTCTGTACAAGGGCACGCAAACACACCAATGCCTCATGCATCGCACCTTGTCCCAAAGCCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACATCCTTCTACAGTAGACATAAAACCAAGTGGAAGAAGTGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTGCCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTCAGTAGCGAACCAACTCCAGTTCAAGCCCCAATGTTTCCTTCCATGTCATCTTTGCAAGGTGCTATGCCTAGTGTAACGCCTTCAGCTACAATGCACCCATCAAACATGGGTAATATATCTCATGCCTGGAATCCACACTCATCATCACCATCTTATGTATCGCCTCCTCAATCACAAACTCTTGCACCAGCAATGGGACTGGGGGCATACATGGGACAACAAATGGCAACTAACATGCCAATGCCAAGGCATCAAGGAATTGGGAGTTTTGCCACCGAGGCAACTGCTTTTGGATTCTCAAATCCAGATCAACAGCTGACTGGTAGGTTGTCAACTGCTGCTACCCCAAACACCTACCATGCAGGAGGGAACCCTTTCGGATGA 2415 0.4464 MMPYLGHIHLERTVRIILPCTEPPTKPVTAQCSLALNFICSDLKEQNPCFTLVMVNRSTRQRIKLSTDSSSSAANSEVEMASRVKEDEKNERIIRGLLKLAPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFSAQEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNIDRLRDFIKHVYVDRRFSGERTYDKPPRVKGDKDDFHENKRTETYHRSPSYEDTHERRYSDRSSPGGRSPVYDQENRQYGDYKKSPGRPPIINDWRREDRFGDGWKFEDHRMSDGNHNVESTSPERTKDLDSSSPPAVRPVREILGENVVPLRISEPPKTNSGQATNGSALTQRTSSSSSLASSNGTPAEVKLETIKSLIDFDDDPEPPVASAIPQAPQTTVAKHGMPANSNDNNWASFDVAPEAKAPQGPSNINPLESMLTQLSVPVSLPSHVSRAQGDSHVATANSGSCATRLLIFNDSSVSRAGPLTGSALTTTAAGAPIVSSFSTFPDSGASVTSFGLTTASTLNNAGQWATLQYQQQQPLFTAAASQPTIQQSTPPVGGALNNQPWTVPSVQGHANTPMPHASHLVPKPANEAKSSVVLHPSTVDIKPSGRSELPEDLFTVKYSPFPAPVPGWQMGPPPSMGISIQYNNAVPMPSYAQPSKSTNPFDVSSEPTPVQAPMFPSMSSLQGAMPSVTPSATMHPSNMGNISHAWNPHSSSPSYVSPPQSQTLAPAMGLGAYMGQQMATNMPMPRHQGIGSFATEATAFGFSNPDQQLTGRLSTAATPNTYHAGGNPFG 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02258 804 SMART arf_gap_3 91 209 IPR001164 GO:0005096
Gma05g02258 804 MobiDBLite consensus disorder prediction 205 373 - -
Gma05g02258 804 PANTHER ARFGAP/RECO-RELATED 488 804 IPR044820 GO:0005096
Gma05g02258 804 PANTHER ARF GTPASE ACTIVATOR 80 466 - -
Gma05g02258 804 MobiDBLite consensus disorder prediction 339 373 - -
Gma05g02258 804 MobiDBLite consensus disorder prediction 205 247 - -
Gma05g02258 804 CDD ArfGap_AGFG 91 201 - -
Gma05g02258 804 PANTHER ARF GTPASE ACTIVATOR 488 804 - -
Gma05g02258 804 PANTHER ARFGAP/RECO-RELATED 80 466 IPR044820 GO:0005096
Gma05g02258 804 Pfam Putative GTPase activating protein for Arf 92 202 IPR001164 GO:0005096
Gma05g02258 804 Gene3D Arf GTPase activating protein 80 210 IPR038508 -
Gma05g02258 804 ProSiteProfiles ARF GTPase-activating proteins domain profile. 91 209 IPR001164 GO:0005096
Gma05g02258 804 SUPERFAMILY ArfGap/RecO-like zinc finger 90 202 IPR037278 -
Gma05g02258 804 MobiDBLite consensus disorder prediction 274 311 - -
Gma05g02258 804 PRINTS HIV Rev interacting protein signature 103 122 IPR001164 GO:0005096
Gma05g02258 804 PRINTS HIV Rev interacting protein signature 140 161 IPR001164 GO:0005096
Gma05g02258 804 PRINTS HIV Rev interacting protein signature 122 139 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02258 Gma-Chr5 43609431 43622276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02258 91 201 C2H2 Transcription Factor Family AT4G21160 35.043 2.40e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02258 - - gmx:100781002 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02258 05 43609431 43622276 Gma05g02258 05 43609431 43622276 ECH
Gma05g02258 05 43609431 43622276 Gma08g00379 08 3184226 3193021 GST