Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02254 ATGACTTTCACTAATGGCGATGCAGCTGCTGCCTCCCTCAACAAGGTCCCCACGGTCAACTTCACCAAGCTCTTCATTGGCGGACACTTCGTTCACTCTGTGTCAGGAAAGACATTTGAGACAATAGATCCAAGAACAGGAGATGTTATAGCGAGGATCAGCGAGGGAGATAAAGAAGACATTGACATTGCTGTTAAAGCAGCACGTCATGCATTTGACAATGGTCCATGGCCTCGCCTTCCCGGCTCTgagagaggaagaattttgctgaaatgggcagagctaatagaggaaaacgcagaagaacttgcggcactagatgccattgatgcggggaagttgtaccatatgtgtaggaatttggaagttccagcagcagcaaacactcttcgttactatgcaggtgctgccgataagattcatggcgaggtgttgaaaatgtcccgagacttccatgcctatacattgcttgaaccacttggtgttgtgggacacattactccctggaatttccccaataccatgttctacatcaaggttgctccttctttagctgctggctgcaccatggtcctcaagcccgccgagcaaacacccctctctgctttgtttaatgctcatcttgctaaattggctggaatcccagatggagtgatcaatgtagtgcctggatttggcccaactgctggtgctgcattaagctcacacatggatgttgataaggttagctttactggttcaacacaaacaggccgtgagataatgcaggctgcagctaagagtaacttgaaacaagtttcacttgaattaggaggcaagtcACCCCTCATAATTTTTGATGATGCTGATATAGACAAAGCTGCTGAGCTAGCTCTACTAGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCAAGTTCCCGTGTGCTTGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAACTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCCTTTGATCCTAAAGTTCAACAAGGCCCTCAGGTTGACAAGGAACAATTTGAAAAGGTCCTTTCATATATTGAGCATGGAAAGAAAGAAGGAGCTACCCTTTTGACTGGGGGTAAAACAGTGGGAAACAAGGGCTACTTTATTGAGCCAACAATTTTCTCCAATATAAGGGAGGATATGCTTATAGCACAGGATGAAATATTTGGCCCAGTAATGGCACTGAAGAAGTTTAAGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACCAAGTATGGCCTAGCAGCAGGCATAGTGACCAAGAATTTGGATACGGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACTATTTGGATCAACTGCTATTTTGCCTTTGGCGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTGGAAGCCCTTCACAAGTACCTACAAGTTAAATCTGTTGTTACTCCCCTTTACAATTCACCCTGGCTTTGA 1509 0.273 MTFTNGDAAAASLNKVPTVNFTKLFIGGHFVHSVSGKTFETIDPRTGDVIARISEGDKEDIDIAVKAARHAFDNGPWPRLPGSERGRILLKWAELIEENAEELAALDAIDAGKLYHMCRNLEVPAAANTLRYYAGAADKIHGEVLKMSRDFHAYTLLEPLGVVGHITPWNFPNTMFYIKVAPSLAAGCTMVLKPAEQTPLSALFNAHLAKLAGIPDGVINVVPGFGPTAGAALSSHMDVDKVSFTGSTQTGREIMQAAAKSNLKQVSLELGGKSPLIIFDDADIDKAAELALLGILYNKGEVCVASSRVLVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKEQFEKVLSYIEHGKKEGATLLTGGKTVGNKGYFIEPTIFSNIREDMLIAQDEIFGPVMALKKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDHGLEALHKYLQVKSVVTPLYNSPWL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02254 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491
Gma05g02254 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 3 502 - -
Gma05g02254 502 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 3 502 - -
Gma05g02254 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Gma05g02254 502 Pfam Aldehyde dehydrogenase family 31 492 IPR015590 GO:0016491
Gma05g02254 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
Gma05g02254 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620
Gma05g02254 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02254 Gma-Chr5 43567817 43572529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02254 5 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.940 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02254 K12355 - gmx:100817721 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02254 05 43567817 43572529 Gma08g00375 08 3141673 3146454 GST
Gma05g02254 05 43567817 43572529 Gma07g00790 07 8358352 8362915 PCT
Gma05g02254 05 43567817 43572529 Gma09g01756 09 43183139 43187346 PCT
Gma07g00790 07 8358352 8362915 Gma05g02254 05 43567817 43572529 PCT
Gma09g01756 09 43183139 43187346 Gma05g02254 05 43567817 43572529 PCT