Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02235 ATGGGGGAAGGTGAAGCTGAGGGGAGTGATGGCGCTCCCAAGAATATTGTGTCAAACGACGTCGTTGCGAATGCCCTGTTGCCGTTCGATGTTCCCGCCAAGAAGCTCGCGCGGCAGCTCGATTTCACCGATTTCGGTGGGATGCCGGCGCCGCCGCAGCCGCCGGTGATTTTGCCACTGCCGCCTTCTGCTTCTGTCAGGGTTGGGAAACCAGAATCTCCTAAATCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACCCCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTAAATTGTTATAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCAGTTGAAGCTACTTTAGAACGGAATCCAAATGCATTTAGGCCAAAAATAGCGAGTAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAGTTTTGATATTGGGAAAGCATAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATCGGTTCCTCTGGCTATTCTTCACCACCAATATCAAAGAAAAGAAAAGGTCAAGAACTGTTATTTGGGCCAACCGTCAAGGATCCATCAGTTGGCAGGCAGGGGCAACAGGCAAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCACCTATCCCAGGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGATGTTTACAGACCACAAAAATTTCATGGATAAGCATGCTGAAGATCAGACAGAAACTTCTCGTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAGGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTCAAGTGCAAACCAGACAGATAATATCAGCCCGAATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCACTGTCGGGTCAAGGGCACATGCTTGCAACACATCTTTGCAACCGCCTTATGGACAAGTAATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAAACAAAGTGCTCTTCATTAGCCAGAAGTGAATTAGAGAGTCAAAAGGATCCAAACATCAATTGTACTGGAAACGCCAGTACTGAGACACAGCATCAGCAGGGAGCCACTAATAACGGTGTTGCCAAAACGGCGGGCAACTCCATTAATTCTACATCTTTGTTTCCTGGTGGTAGTCTTGTTTCTGAAAATGGTGAAACTTATCCGAAGATCCAACAAATCGAAAACAAGAAATTGAAAACAGATTCGTCACCGCCACACGCGGCTTTGTCTCGCGCCTTCAACAATCATCTTGGTACCACCAAGCCATCACCTCCATTTGCAACATACGCGTCGGGACGACTGCCAGAGACGACCATTCCTTTTCTCATTGTTGTATCGCCGCAAAACCATCGAAACCAGAGCCACCGTCGTTGGTTAGGGCCACCCGCAACTTCCTCGCTCTTGACACCACGCTTAATCTCTCTTAGCGTCTGGCGGCAACGTTTCTAG 1956 0.4606 MGEGEAEGSDGAPKNIVSNDVVANALLPFDVPAKKLARQLDFTDFGGMPAPPQPPVILPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGPTVKDPSVGRQGQQANNVRVPAPSSSLSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKMFTDHKNFMDKHAEDQTETSRASSTQEQLPSQKEANVEKAMADDDCSSANQTDNISPNNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASTVGSRAHACNTSLQPPYGQVMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPNINCTGNASTETQHQQGATNNGVAKTAGNSINSTSLFPGGSLVSENGETYPKIQQIENKKLKTDSSPPHAALSRAFNNHLGTTKPSPPFATYASGRLPETTIPFLIVVSPQNHRNQSHRRWLGPPATSSLLTPRLISLSVWRQRF 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02235 651 MobiDBLite consensus disorder prediction 389 407 - -
Gma05g02235 651 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 178 212 IPR005172 -
Gma05g02235 651 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 92 127 IPR005172 -
Gma05g02235 651 MobiDBLite consensus disorder prediction 356 413 - -
Gma05g02235 651 PANTHER TESMIN/TSO1-RELATED 62 533 IPR028307 -
Gma05g02235 651 MobiDBLite consensus disorder prediction 275 292 - -
Gma05g02235 651 ProSiteProfiles CRC domain profile. 91 215 IPR005172 -
Gma05g02235 651 MobiDBLite consensus disorder prediction 268 303 - -
Gma05g02235 651 MobiDBLite consensus disorder prediction 363 377 - -
Gma05g02235 651 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 62 533 - -
Gma05g02235 651 SMART CXC_2 90 130 IPR033467 -
Gma05g02235 651 SMART CXC_2 175 216 IPR033467 -
Gma05g02235 651 Coils Coil 125 145 - -
Gma05g02235 651 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02235 Gma-Chr5 43426602 43434403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02235 32 501 CPP Transcription Factor Family AT4G29000 57.061 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gma05g02235 TCR 3.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02235 - - gmx:100786353 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02235 05 43426602 43434403 Gma05g02235 05 43426602 43434403 ECH
Gma05g02235 05 43426602 43434403 Gma08g00359 08 3018737 3024794 GST