Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02234 ATGGAGATGGATCCTCCACCGAAGAGCTGGAGCATCCACACCCGATCCGAGATCATCGCAAAATACGAGGTCATGGAGCGGGTCGGGTCGGGAGCCTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGACGGCCTCACCGTGGCCCTCAAGGAAATCCACGACTACCAGTCCGCCTTCCGAGAAATCGACGCGTTGCAGCTCCTCGAGGGCTCCCCAAACGTCGTGGTTTTGCACGAGTACTTCTGGCGCGAAGACGAGGACGCCGTCCTCGTCCTTGAGTTCCTCAGAACCGACTTGGCCACCGTCATCGCCGACACCGCCAAGGCCAACCAGCCCCTCCCCGCCGGCGAGCTCAAGTGCTGGATGATCCAGATTCTCTCCGGCCTCGACGCCTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCTAATCTCTTAATTTCCGAACACGGCCTCCTCAAGATCGCTGATTTTGGACAGGCAAGAATTCTCATGGAGCCTGGTATTGATGCTTCTAATAATCATGAAGAATATTCTAGAGTTTTAGATGACATTGACAATAAGGATACTATTACTAGCACCCACGATGGGAATGCAACATGCAACACAAtttccttgaaGAATTCAAGGTTCTTTAGCCTTGGAATTTCCTATCGCACTTCGAACAATATATATTGA 687 0.5298 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLEGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIADTAKANQPLPAGELKCWMIQILSGLDACHRHMVLHRDLKPSNLLISEHGLLKIADFGQARILMEPGIDASNNHEEYSRVLDDIDNKDTITSTHDGNATCNTISLKNSRFFSLGISYRTSNNIY 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02234 228 SMART serkin_6 22 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02234 228 Pfam Protein kinase domain 22 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02234 228 Gene3D Transferase(Phosphotransferase) domain 1 109 215 - -
Gma05g02234 228 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Gma05g02234 228 ProSiteProfiles Protein kinase domain profile. 22 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02234 228 SUPERFAMILY Protein kinase-like (PK-like) 8 170 IPR011009 -
Gma05g02234 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gma05g02234 228 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Gma05g02234 228 PANTHER CYCLIN-DEPENDENT KINASE 12 16 168 - -
Gma05g02234 228 PANTHER CELL DIVISION PROTEIN KINASE 16 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02234 Gma-Chr5 43420349 43422876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02234 6 196 Core Cell Cycle Gene Families AT4G28980 66.327 1.47e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gma05g02234 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02234 - - gmx:100776564 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02234 05 43420349 43422876 Gma05g02234 05 43420349 43422876 ECH
Gma05g02234 05 43420349 43422876 Gma08g00358 08 3012756 3014553 GST
Gma05g02234 05 43420349 43422876 Gma07g00761 07 8054681 8058012 PCT
Gma05g02234 05 43420349 43422876 Gma09g01785 09 43463425 43465315 PCT
Gma07g00761 07 8054681 8058012 Gma05g02234 05 43420349 43422876 PCT
Gma09g01785 09 43463425 43465315 Gma05g02234 05 43420349 43422876 PCT