Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02231 ATGGCAAGAGCAAAACAAGGGTCACATTGGTCATTTCAGAAACTGCCGTCCGAGTCTTCTAATTCCGGCAAGTTGAATCCAATCACCGTAACTTCATATTCATATACCCCCCGAACGGACCAAAGTTTCACTCACTCTCCCGCCACCATGACCACCGTAACGGTCACGACTCGAGCTCAGATCCTCCGCCACACCGCCGCATTCACCTCCTCCGTCCTCTCGCAATCCGAACTCCGGCGCCGCCTCATCGCCACTCTCCTCCGCGACACCCCACTCTCCGACCAAAAACACCTAAACCTCGCCGCAGACACTCTAGAGAGCGCGATCTCGTTCTCGAGCCCCCCCACCCGCTCCTCGTCCCTCTCTCTCGCCGAGAAGCTCCTCCTCCCTCTCCCGGACTTCCCCCTCTCCTCGCTCCTCCTTTCTCTCATCCACGCCCTTCGTAGTCGCCCTACCGAATCCGCCGTTAGCCTCCTCCGAATATTCCACTCCAACAATAACGCTTCCCTCGCTCGTTCCGAAATCGCTCCTGCGCTCTACGAGTGCCTTTTCTCTCTCCACCTCTTCCCCGTCTTCCGCTGGTTCGATGACCAGAGGACGCGGATTCTCTCCTCGAGCCGTAACGATGACGATTACATTTATTCGGTAACTTCGGAGGAGTACTCCGTGTTGCTGCCTTGCGCGAAGGTGTTGTCGAAGATGAGCGAGGAGCAGGCCGCGAAGCTCAGGGAGGTGGAGAGAGAGTACGAAGATGTTCTCAACCAGAACTGCATGGTTCTCGCCGAGTATTTCAAAGAGGTTTTGGTCAACGAAAACGGTGACGCTGCTGTGGTCAGTCCACCGTCGTTGGTACTTAAGAGCGCCGCTGAAGATGGCCACGGCGGCGGGGAGATCAGAAAGGAGGAGATGATGCAAATGAACGTGTTGGAGAACGGACGGTATAATAATCCAATATGGTCCGAAAGGGAAGCATCTATTGAATTTTTGAGCCCCAGTACCAGCAGCAGATCTTCCCAAGCGCCATTTTATCCTCAAAGAGTCTTGTCCAGAATCCTCAAGCCCCAAAAAGCTTCAAAAACTTGGACAACGCCAGTCTATTTAAACTCAACCGCTGATACTGATTTTTCTTTAGATGAGAGTTTGCTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGACGAGGAAAAGGACAAAACTGTTGCATTGTTGGAGCCTCGACAAAGCCAAATTAAGGAACAAATGCCAACTATCTTCAAACAATCAAGAGGTTCCCCAGATTATCCAATGGCAGACTTGGATACCCCGCTGCATGGAATTGGGAAGCATGCACATCCCAAGGACTTTGTCTGTCCAATAACAAGTTACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGAAACTTAACCTGTCCCATCACACGCCAGAAGCTGCAAAACACCCAGCTACCCAAAACAAATTACGTGCTCAAACGACTAATTGCGAGCTGGAAAGATCGCAACCCCCATTTGGTCCCACCATCGTATGAGATTCCGTACGAAGAAACCGAGGAAGCTGTGAAGCTAACAATCCCTTCAACTTCTCCTAATAGCGTTATAACGCAAGCCACGGTAGATGGGATGATGAGTGAGTTACGCTGTGCAATCAATAACCTTTATATGTCAGAGGTTCTCCAGGAATCTGAAATGGCCGTGCTTCAAATTGAAAAGTTCTGGAGAGGAGTGAATGTGGGAGTGGATATACATAGCATGCTATCGAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTTCAAGCATCAGTTTTCCTTTTGGCGGAGATGGGGTCCAGAGACAATGCTGTTATTAAGACTCTCACACGTGTGGACTCTGACGTGGAATGTATCATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTGCTAAACCCTTCCACTGTGAATCTTGCAGAGATGGCAATAGTGGAGTCTCTAATAACAGTTTTCAATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTGAAGCCCAAAACAGCTGCAGTGCTTTTACTTGCACGGATTATTGGAAGCAGTGAAGAGATAATTTCATCTTCGGTTGTCAATACCCTTTTCTCTGAAAAAGCAATAGGAACTATTGTCGGCAGTTTGGGAGCTAACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATCTTGTTGAGATGCATGGAAGAAGATGGCACTAGCAGGAACAACATTGCTGATAAAGCAGAGCTGACACCTCTTTTGGAAACCTTAATCGGTGCAACTGATGGAGATCGATTTAAGATTATTCAGTTTTTCTCTGAGTTAGTCAAATTAAATAGGCGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTTATGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCTATGGATACTCTTATTTCATGCCTGAGAAACGCAGATTTCCCCGTTACCCAATTAGCAGCTGCTGATACAGTTATTTCACTGCAAGGGAGTTTTGACTTCTCTGGAAACCCTCTAACCAGAGAAGTCCTTCTTAAACGTGCAGGTATCGAGAAAAGTTCCAGAAGTCTTGTACAGGTGAATCAGATCAGCAACTTCAGCCCAGAAATAGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGCACTCTTTTCGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTATATCAGCTACATGGCTCATATACATGTTGACCATTCTACCAGATACAGGGATACAAGTAGCAGCTCGAGCCTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTACTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCATAAAAGGGTTGAGAGAGCTAAAGAGATCCTATCCTCTAGCAACTAAAATGCTAAAGGTTCTGGTTGAAGAAAATGAATCTAAAGCGGACATTTGGATACATACACAGCTCATAAAAGAAGACTGTAGCGAGAATGGAGAGGTTCTGTCTGTCATTTGCTTTAAGGATAAATTTTTTTCTGGACATACAGATGGCACTATTAAGGTCTGGACATTAAAGGATAACTTATTCTATCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGGTGATTTTAGAATCTGATGACAGACTATACAGTGGTTCACTTGACCGAACTGCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTTCATGGGAAATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTTAACACTATTCAAAGTGGTTATAAAAGATTACTTGGGAAAGCAAATCCTATTCGTGCACTGCAAATTCATGGTGAACTTGTATATGCAGCTGGCTCTAACTTGGATGGATCCGCTATAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCTCTACAAACTGGATCTGATGTGCGGGCCATGGCAGTGAGCTCAGAATTGATTTATTTGGGGTGCAAAGGAGGCTTGGGGAATGAATTAAAAGAAGATGCTGAAAGTGCAGCGGTACAGGAAGACATAGATGAAACTTACCTTGACATTTGA 4077 0.4506 MARAKQGSHWSFQKLPSESSNSGKLNPITVTSYSYTPRTDQSFTHSPATMTTVTVTTRAQILRHTAAFTSSVLSQSELRRRLIATLLRDTPLSDQKHLNLAADTLESAISFSSPPTRSSSLSLAEKLLLPLPDFPLSSLLLSLIHALRSRPTESAVSLLRIFHSNNNASLARSEIAPALYECLFSLHLFPVFRWFDDQRTRILSSSRNDDDYIYSVTSEEYSVLLPCAKVLSKMSEEQAAKLREVEREYEDVLNQNCMVLAEYFKEVLVNENGDAAVVSPPSLVLKSAAEDGHGGGEIRKEEMMQMNVLENGRYNNPIWSEREASIEFLSPSTSSRSSQAPFYPQRVLSRILKPQKASKTWTTPVYLNSTADTDFSLDESLLSSSSDSEAENDEEKDKTVALLEPRQSQIKEQMPTIFKQSRGSPDYPMADLDTPLHGIGKHAHPKDFVCPITSYIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPSYEIPYEETEEAVKLTIPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIEKFWRGVNVGVDIHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEMGSRDNAVIKTLTRVDSDVECIMALFKNGLTEAVVLLYLLNPSTVNLAEMAIVESLITVFNKKEEDLVKMCLKPKTAAVLLLARIIGSSEEIISSSVVNTLFSEKAIGTIVGSLGANLAKERIAAVEILLRCMEEDGTSRNNIADKAELTPLLETLIGATDGDRFKIIQFFSELVKLNRRTFNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNADFPVTQLAAADTVISLQGSFDFSGNPLTREVLLKRAGIEKSSRSLVQVNQISNFSPEIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGMKSRNPELRSACFISATWLIYMLTILPDTGIQVAARACLLKQFIAKLNSTKDVEDRILSMLALNSFLHFSDGLGDLTSYTKDIIKGLRELKRSYPLATKMLKVLVEENESKADIWIHTQLIKEDCSENGEVLSVICFKDKFFSGHTDGTIKVWTLKDNLFYLLQEIQEHTKAVTNLVILESDDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKDQIHNLVVTNSLACFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLGKANPIRALQIHGELVYAAGSNLDGSAIKIWNNSNYSMVGSLQTGSDVRAMAVSSELIYLGCKGGLGNELKEDAESAAVQEDIDETYLDI 1358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02231 1358 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 56 1334 - -
Gma05g02231 1358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 519 IPR013083 -
Gma05g02231 1358 MobiDBLite consensus disorder prediction 379 398 - -
Gma05g02231 1358 ProSiteProfiles U-box domain profile. 443 518 IPR003613 GO:0004842|GO:0016567
Gma05g02231 1358 ProSiteProfiles Trp-Asp (WD) repeats profile. 1141 1174 IPR001680 GO:0005515
Gma05g02231 1358 Pfam U-box domain 445 515 IPR003613 GO:0004842|GO:0016567
Gma05g02231 1358 MobiDBLite consensus disorder prediction 10 27 - -
Gma05g02231 1358 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1141 1174 - -
Gma05g02231 1358 SMART WD40_4 1134 1173 IPR001680 GO:0005515
Gma05g02231 1358 SMART WD40_4 1208 1251 IPR001680 GO:0005515
Gma05g02231 1358 SMART WD40_4 1092 1129 IPR001680 GO:0005515
Gma05g02231 1358 SMART WD40_4 1260 1300 IPR001680 GO:0005515
Gma05g02231 1358 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 56 1334 - -
Gma05g02231 1358 SMART Ubox_2 447 511 IPR003613 GO:0004842|GO:0016567
Gma05g02231 1358 Gene3D - 1083 1341 IPR015943 GO:0005515
Gma05g02231 1358 SUPERFAMILY RING/U-box 443 519 - -
Gma05g02231 1358 MobiDBLite consensus disorder prediction 1 27 - -
Gma05g02231 1358 Coils Coil 746 766 - -
Gma05g02231 1358 SUPERFAMILY ARM repeat 88 1071 IPR016024 -
Gma05g02231 1358 CDD RING-Ubox_PUB 448 490 IPR045210 -
Gma05g02231 1358 Coils Coil 228 255 - -
Gma05g02231 1358 SUPERFAMILY WD40 repeat-like 1113 1333 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02231 Gma-Chr5 43390813 43398251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02231 445 532 U-box Gene Family AT5G42340 43.182 5.49e-17 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02231 - - gmx:100808867 2225.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02231 05 43390813 43398251 Gma05g02231 05 43390813 43398251 ECH
Gma05g02231 05 43390813 43398251 Gma08g00356 08 2997203 3004435 GST