Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02230 ATGAATAGAGGTGTTTTGCAAAGCTCACCGGTGAAACAAATGATGGCCGGGAACCCTAACAATTGGTGGAACATCAACACCATGCGCCCTCCTCCTCCTCCTCCACAAGCTTCTCCTCCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCTTATTATACCCCCACTTCTTCTCTTCCTCTTCCTTCTTGGCATGACAACAATCAAGAGCTACCTGAGTCATGGAGCCAACTACTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGGTATGTGCCAGGTTCAGTCTAAGAAGTTGGAGAACTGGGAGCAACAAATGCTAAGCCAGGCTCCAAGTGCTCCTATTGTTGATGTTAAGCAAGAAAGCTCGGTGAACAGCTATGCGTATGGGCATGGAAACGAAGAGTTTCAACCAGCAAAGCCAACATGGTCTCAAATAGTGCCTGCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCTAACAATAACACCGATGCGAGGCCTCCTCCACCAGATCCATCCTCAGAGTGTGATAGCGCTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAATCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGactgacacggcttctgtcttattagaagctattggctatatcagattccttcagagtcaaattgagGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCAGCAACAATCCGTAAGAAATAATACCAACCCACCATTTCTGGTTCAAGGAGAGAACAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTAGTGAGCAGGATTCTCAAGAAGAACAAAAGAAAGACCTGAGGAGTAGAGGGTTATGCTTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCTCCTGCTTTTGGTGGGGGATTTCGGTAG 1071 0.4454 MNRGVLQSSPVKQMMAGNPNNWWNINTMRPPPPPPQASPPFFSTPSNFLTPYYTPTSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGGMCQVQSKKLENWEQQMLSQAPSAPIVDVKQESSVNSYAYGHGNEEFQPAKPTWSQIVPASSPKSCVTSFSSSMLDFSNNNTDARPPPPDPSSECDSAATGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRQQQSVRNNTNPPFLVQGENNCIFPEDPGQLLNENCLKRKAASEQDSQEEQKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02230 356 Gene3D - 207 260 IPR036638 GO:0046983
Gma05g02230 356 PANTHER OS05G0228400 PROTEIN 17 342 - -
Gma05g02230 356 CDD bHLH_AtbHLH_like 207 256 IPR045239 -
Gma05g02230 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 259 IPR036638 GO:0046983
Gma05g02230 356 Coils Coil 305 325 - -
Gma05g02230 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Gma05g02230 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 342 - -
Gma05g02230 356 MobiDBLite consensus disorder prediction 167 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02230 Gma-Chr5 43376736 43380838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02230 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.000 1.43e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02230 - - gmx:100777095 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02230 05 43376736 43380838 Gma05g02230 05 43376736 43380838 ECH
Gma05g02230 05 43376736 43380838 Gma08g00355 08 2983600 2987387 GST
Gma05g02230 05 43376736 43380838 Gma07g00756 07 7998999 8003390 PCT
Gma07g00756 07 7998999 8003390 Gma05g02230 05 43376736 43380838 PCT