Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02228 ATGTCTGAGGCATTGGAAGATGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGAAGAAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTACCAGGGTGTGAGTCACCAGAGAGGGAGGGTGCGTTTAGGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGAAAACTGGAATGGTGGATCTGAAAAAGATGCTGCCTTGTTTTCTCCAAGGGGTGCTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACGCTCTCCAAAACCATTGCATGAGAAAAAGCCCCAGATTTCTGCTCCAGCTGCTAAGGCGCAGGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCTAAAGAATGATACTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGACGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTTTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGTAACTAG 864 0.463 MSEALEDVPSMKGGCEEEEEGLNLKATELRLGLPGCESPEREGAFRSVVVSGAKRGFSDAIDENWNGGSEKDAALFSPRGAVSVSAAKSLTLTATDCTNQPTALGASVLKETVPRSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPLKNDTDAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSFEAIGLAPRAMEKCKSRN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02228 287 Gene3D - 161 280 - -
Gma05g02228 287 MobiDBLite consensus disorder prediction 1 20 - -
Gma05g02228 287 SUPERFAMILY CAD & PB1 domains 162 268 - -
Gma05g02228 287 Pfam AUX/IAA family 27 278 IPR033389 -
Gma05g02228 287 ProSiteProfiles PB1 domain profile. 167 269 IPR000270 GO:0005515
Gma05g02228 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 280 IPR003311 GO:0005634|GO:0006355
Gma05g02228 287 PANTHER AUXIN-INDUCED PROTEIN 8 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02228 Gma-Chr5 43334679 43337147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02228 171 277 B3 DNA Binding Superfamily AT4G23980 29.907 4.24e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma05g02228 AUX_IAA 2.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02228 K14484 - gmx:100778529 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02228 05 43334679 43337147 Gma05g02228 05 43334679 43337147 ECH
Gma05g02228 05 43334679 43337147 Gma08g00351 08 2931972 2934900 GST
Gma05g02228 05 43334679 43337147 Gma09g01789 09 43502168 43505476 PCT
Gma09g01789 09 43502168 43505476 Gma05g02228 05 43334679 43337147 PCT