Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02211 ATGGGTCGTCGTAAGATTGAGATTACGGAGGTGAAGGACTCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGGACAGGTTTGTTCAAAAAAGCGAATGAATTATCCATTTTGTGTGGAGCAGAAGTTGCTATTGTTGTGTTCTCTCCTGGGAACAACCCTTACTCTTTTGGGCACCCAAGTGTTGATGTCGTTGTAGACAAGTTCCTTAAACAAGAGCCGAAATCAAATGTTGTCCAAGGAACATCTAATGAAGCTGGTGACATTGATAGGCTGAATCAACAACTATCTAATGTTGAAGATCAAATACGCGAGGAACAAAAGAAGGCTGCAGAACTCAACGAGAGAATGAAACAAAAAGGAGTGACACAAACTTTTCAAAACAAAGAATTGCAAGGTTCATATTTAGAGATCCAAAAGATGAAGGACTATTTTGATGCAATCGAGGTGTCAGATTATATGTTGCTCCTTGCAAAAGAACCAGTAGTTGGAATAACCAAACAAGTTGCTACTAAGAAAAGAAGAAGGAATTGA 534 0.3933 MGRRKIEITEVKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSFGHPSVDVVVDKFLKQEPKSNVVQGTSNEAGDIDRLNQQLSNVEDQIREEQKKAAELNERMKQKGVTQTFQNKELQGSYLEIQKMKDYFDAIEVSDYMLLLAKEPVVGITKQVATKKRRRN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02211 177 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Gma05g02211 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gma05g02211 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma05g02211 177 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Gma05g02211 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma05g02211 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma05g02211 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma05g02211 177 PANTHER MADS BOX PROTEIN 2 169 - -
Gma05g02211 177 Coils Coil 89 123 - -
Gma05g02211 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 169 - -
Gma05g02211 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma05g02211 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02211 Gma-Chr5 43205345 43205878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02211 1 121 Type I MADS-box Gene Family AT2G34440 43.200 1.84e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma05g02211 SRF-TF 4.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02211 - - gmx:100790601 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02211 05 43205345 43205878 Gma08g00326 08 2774415 2774948 GST