Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02209 ATGGGTCGTCGTAAGATTGAAATTGCGACATTGAAAGACCCTAATACGAGGCAAGTCACATTTTCCAAGCGTCGAACGGGCTTATTCAAAAAGGCAAATGAATTATCCATCTTGTGCGGCGCAGAAATTGCTATTGTTGTGTTCTCCATTGGAAACAAGCCTTACTCTTTTGGGCACCCAGGTGTTGATGTTATTGCGGCCAAGTTTCTTCAAGAAGCGGCTAATTCAAGCGATGCCAAACAAATTGATGCCCAAGGAAACAACCCATCTAATGAACTTGGTGACATGAATAGGCTGAATCAACAATTGTCTGATGTTCAAACCCAAATACTCGAGGAAGAAAAGAAGGGCGCGGAACATGATGAGAGACTAAAACAACACCAGGTCACACAACTCTCTCAGTATAAGGAACTGCAAGCTTCATATTTAGAGCTCCAACATAGAGTGAAGGACTATGTCAACGCCATCGAGGTGTCGGAGTGTATGATACTCCTTGCACAAGAACCGGTGGTTGGAATAACAAAACAAATGACTGCTACAAAGAGGAGAAAAAAGAATTGA 561 0.426 MGRRKIEIATLKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNKPYSFGHPGVDVIAAKFLQEAANSSDAKQIDAQGNNPSNELGDMNRLNQQLSDVQTQILEEEKKGAEHDERLKQHQVTQLSQYKELQASYLELQHRVKDYVNAIEVSECMILLAQEPVVGITKQMTATKRRKKN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02209 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gma05g02209 186 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Gma05g02209 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma05g02209 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 177 - -
Gma05g02209 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma05g02209 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma05g02209 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma05g02209 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma05g02209 186 Coils Coil 96 116 - -
Gma05g02209 186 PANTHER MADS BOX PROTEIN 2 177 - -
Gma05g02209 186 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Gma05g02209 186 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02209 Gma-Chr5 43192043 43192860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02209 1 167 Type I MADS-box Gene Family AT2G34440 40.331 1.31e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma05g02209 SRF-TF 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02209 - - gmx:100791127 355.525