Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02200 ATGTCAAATTTGCATTTTATTTTCTATGGTTTAGTAGTTATTCTTCTTCTACAAAATCCCAGTGCAACACAATGCCATACCAAGGGAATTCAGCCTAAGCCAGGGAATGGATTATCTACCAACATGACCAGAGTCGAATTTTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTAGGTGGCCTCAAACATTCTGTCTTTAGGACAGCAAATAATAAGCTTTTTCCTTCTCACACTTTGCACGTTTCTAAGAAGCATGGTAAAGGAGGTTTTTCGTCAATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATGTAGTGAGAGTGGTAATTAAGGTTCATGCAGGGGTTTACACTGAGAAAGTGAACATTTCTCCTTTCAAATCCTTCATAACAATACAAGGAGAAGGAGCAGATAAGACCATTGTTCAATGGGGTGACACTGCTCAAAGCCAGCCATTAGGAACCTATGGTTCTGCAACATTTGCTGTGAATTCAGCTTATTTCATAGCCAAGAACATCACATTCAAAGCAAGTGACAAGCTCCATTCCAATCTTCCTCTATCCAACACTGCCCCAATTCCAGCACCAGGAGCAGTTGGAAAGCAGGGAGTGGCATTGAGAATTTCAGCAGACACAGCAGTATTCCAAGGTTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATATTGGTAGGCATTACTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATATTTGGCAACGCTCTGTCTCTCTTTGAGGGATGTCACGTGCATGCCATAGCACAACTTACAGGGGCCTTAACAGCGCAAGGAAGGAGCAGTTTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGGGCACTTTACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTTGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGCGACCCTAACCGTGAAATGACTGTATTCTATGGACAGTACAAATGCACAGGACCAGGAGCAAGCTACGCGGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCTAAGCCTTTTATTTCACTTAGCTATATTGATGGCTCTGAATGGATCAATCTCTCTCTTTGA 1164 0.4313 MSNLHFIFYGLVVILLLQNPSATQCHTKGIQPKPGNGLSTNMTRVEFSEQQFMKWVKFVGGLKHSVFRTANNKLFPSHTLHVSKKHGKGGFSSIQAAIDSLPFINVVRVVIKVHAGVYTEKVNISPFKSFITIQGEGADKTIVQWGDTAQSQPLGTYGSATFAVNSAYFIAKNITFKASDKLHSNLPLSNTAPIPAPGAVGKQGVALRISADTAVFQGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQLTGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASYAGRVSWSRELTDEEAKPFISLSYIDGSEWINLSL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02200 387 SUPERFAMILY Pectin lyase-like 76 385 IPR011050 -
Gma05g02200 387 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 386 - -
Gma05g02200 387 Pfam Pectinesterase 84 379 IPR000070 GO:0030599|GO:0042545
Gma05g02200 387 ProSitePatterns Pectinesterase signature 2. 242 251 IPR033131 -
Gma05g02200 387 Gene3D - 77 386 IPR012334 -
Gma05g02200 387 PANTHER PECTINESTERASE 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02200 Gma-Chr5 43106752 43110036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02200 85 386 Carbohydrate Esterase AT1G05310 46.452 2.24e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02200 K01051 - gmx:100793773 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02200 05 43106752 43110036 Gma05g02200 05 43106752 43110036 ECH
Gma05g02200 05 43106752 43110036 Gma08g00315 08 2687478 2690874 GST