Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02197 ATGTCGTGGCAAGCGTATGTCGACGATCACCTTCTGTGTGACATCGAAGGTAACCACCTCACTCACGCTGCTATCATCGGCCAAGACGGCAGCGTTTGGGCTCAGAGTACCGACTTCCCTCAGttcaaacctgaggagataactgccatcatgaatgactttaatgagcctggatcacttgctccaactggattgtatctcggtggcaccaaatatatggtcatccagggtgaacccggtgctgtcattcgagggaagaagGGTCCTGGTGGTGTTACTGTGAAGAAGACCGGTGCGGCCTTGATCATTGGCATTTATGATGAACCAATGACTCCAGGTCAATGCAACATGGTAGTTGAAAGGCTTGGTGATTATCTCATTGAACAGGATGTTGGAGCAATGGAGCGGTGGAGCACAACAGAGCTGAGGAAGAAGTCCCGCAATACGGGTCCTGGTGGTGTTACTGTGAAGAAGACCGGCGCGGCCTTGATCATTGGCATTTATGACGAACCAATGGCTCCAGGTCAATGCAACATGGTAGTGGAAAGGCTTGGTGATTATCTCATTGAACAGGGTCTCTAA 582 0.3866 MSWQAYVDDHLLCDIEGNHLTHAAIIGQDGSVWAQSTDFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTVKKTGAALIIGIYDEPMTPGQCNMVVERLGDYLIEQDVGAMERWSTTELRKKSRNTGPGGVTVKKTGAALIIGIYDEPMAPGQCNMVVERLGDYLIEQGL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02197 193 PANTHER PROFILIN-2 148 193 - -
Gma05g02197 193 CDD PROF 2 130 IPR005455 GO:0003779
Gma05g02197 193 PANTHER PROFILIN-2 1 130 - -
Gma05g02197 193 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Gma05g02197 193 Pfam Profilin 149 192 IPR005455 GO:0003779
Gma05g02197 193 Pfam Profilin 1 130 IPR005455 GO:0003779
Gma05g02197 193 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Gma05g02197 193 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Gma05g02197 193 SUPERFAMILY Profilin (actin-binding protein) 149 192 IPR036140 -
Gma05g02197 193 SMART prof_2 1 131 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Gma05g02197 193 PANTHER PROFILIN 148 193 IPR005455 GO:0003779
Gma05g02197 193 Gene3D Dynein light chain 2a, cytoplasmic 135 193 - -
Gma05g02197 193 Gene3D Dynein light chain 2a, cytoplasmic 2 131 - -
Gma05g02197 193 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Gma05g02197 193 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02197 Gma-Chr5 43079457 43087061 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02197 1 131 Cytoskeleton Gene Families AT2G19760 77.863 1.36e-75 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02197 K05759 - gmx:547670 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02197 05 43079457 43087061 Gma15g00200 15 1633438 1634920 ECH
Gma05g02197 05 43079457 43087061 Gma05g02197 05 43079457 43087061 ECH
Gma05g02197 05 43079457 43087061 Gma08g00311 08 2661429 2662527 GST