Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02154 ATGAAGGCGCAACCACCAGACGGTGCCGCCGCCGTCGCACCCAACGCCGGCGAAGGAGGAGAGAAGAAAACCATAAACGCTGAGCTATGGCAAGCTTGTGCGGGGCCGCTTCTCAACCTGCCTTCGCCTGGAACTCACGTCGTTTACTTCCCTCAAGGCCACAGCGAACAGGTAGCAGCGTCTTTGAAGAAAGACGTGGATGCTCAAGTCCCGAACTATACCAATCTCCCCTCCAAGATACCCTGTCTTCTTCACAATGTCACGCTGCATGCAGATCCAGACACGGATGAAGTATATGCTCAGATGACACTTCAGCCGGTTCCTTCTTTTGACACGGATGCGTTGTTAAGATCGGATATCTTTCTCAGGTCGAGTAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACGGCAAGTGATACGAGTACCCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCTCCTCTTGATTACTCTGTGCAACCTCCTGCCCAAGAACTTGTAGCCCGGGATTTGCATGATAATGTTTGGAGATTCCGCCATATATATCGTGgacaaccaaaacgacacttgcttacgactggatggagtctatttatcggtGGAAAAAGGCTTTTAGCTGGTGACTCTGTTTTGTTTGTAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATAAGACGAGCTAATAGGCAACCCTCCAATTTATCATCTTCGGTACTATCAAGTGATAGTATGCACATTGGAGTTCTTGCTGCAGCTGCTCAAGCTGTTGCAAACAATAGTCCCTTCACCGTGTTCTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTCCAAGGCAGTGTATAGCCACCATATATCACCTGGTATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGATATATGGGTACAATCATAGGTGTCAGTGATCTGGATTCTGTGAGATGGAAAAATTCACTATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGAGGAAAGGCAAAGTAGGGTCTCAGTCTGGGAAATTGAACCTGTGACTACTCCATATTTCATCTGCCCGCCTCCTTTCTTCAGATCCAAGATACCTAGACTACTGGGAATGCCAGATGATGAGCCTGATTTCAACAACCTTTTCAAGAGTACAGTTCCCTGGCTTGGTGATGATATGTGCGTAAAGGGTCCCCAAGCTCTCCCTGGCTTGAGCTTAGTTCAATGGATGAACATACAGCAAAATCCTGCTCTTGCTAGCTCATTGCAGCCAAATTGTGGGCCTTCCATGTCTGGATTGGTTCTGCAAAATCTTCCTGGTGCAGATATTGCAAATCCGCTGGGGTTTTCTACCTCACAAATCTCTCAATCAAACAATGTATCTGTCGATGCTCAGAATATACTTCAGACTTCCCAGCAACTCGATCACATTCAGAAGCCACCATGCCCATCCAGTGCATTGGGAGCAGTCACACAGCCGCTGCAGCAGTTGGGTGATATCACTCAACAACCAAGGAACTTGACAAATCAAACTTTACCACACGATCAAGCTCACACCCAACTTCTGAATCCCCAGAGAGTTGTCCAAACTAACAATATTCATCAACAGCAACAATCGTCCATTCAAAAGCAACAACTGCTTAGAAGCTTGTCTCAGAACCGAGCTCAGAAGCATCAACAAACTACATTGGGTTTGAATGAACGGCAAATTGTGTTTCAATCCCCTATGCCCGATCATTTTAATCAACAATTACAAATGTCTGACAATCAGGTTCGGTTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAGACACTCTTGGCACAGCAGTCTGCATTGCAGCAGCCTGCTCTAATTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGACGTTGCAAACAACTCTAGTTCCCCAATTCCTGGTCAAGTACTGGAAAATCTTCCTACGCTTCAAAACTCACTCCCTGAGGCTAATTCTATCACCCATCAGATAACAATGCCAAGTAGCCAGAAAAATTTTCATTACTCTCATCTATCTCAGCAACCTGCCTTGCTGTCTGAAATGTCTGGCCATGTTGGACTTCCCCCTACAGTTACAACCAATCCACTTTCTGCTTCTGGTGGAAGTATACTGACTGGCGTGGGGCAATCGGTAATTACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACCGTGCCAGTGTACTTCCTCCGGTGGTAAGTTCCCAGATCCATAGGAGCACAACAATAGGGGATGACATGGCTCAGTCTGCTGTCACGATCTCGGGTGCAAGTACCCTAGAAACCATGTCATCTAATGCAAACATTGTCCAGCCGAAGTATGAAGTAAAGGCTTCTTTAAATATTTCAAAAAATCAGAATCAAGGGAATGTTGCCCCTCAGACATACTTGAATGGTGTTGTTCAGACAGACTATTTGGATTCATCATCTTCTACAACATCACTTTACCATTTTCGGAGTGATACTCATATGCATCAGAATACCAACCCATTTTCTTACAATCCACAGTTGGTTTATTGTAGAGACAATAGTCAAAATGTTGAAGTTCAGGCTGATGCTAGGAACAATGTTCTGATTGGCAATAACGTTAATGGCCAAATGGGAATGCCATCGAATCTAGATTCTCTTTTAACCAAAGGCACAGTGGGGCTGGGGAAGGAGTTGTCTAATAAATTTGCCTCCGGAGGCTTGCTTAGAGACTTAGAAAATAACAAAGGTGTTCCGCCAGAAATTTCATCTTCAATGGTTTCACAGACATTTGAAGTCCCTGATATGAGCTTCAATTCAATTGATTCTACAATAGATGGTAGTGGCTTCTTGAATAGGGGTCCATGGGATCTGCCACCACCACCTCCACCACAACAACAACAGGTTCAACGGATTAGAACATACACCAAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACACGATATTCAGGTTACGAGGACCTTAAACAGGATCTGGCTCTTAGGTTTGGTATTGAGGGACAGCTGGAGGATCTACAAAGGATTGGTTGGAAACTTGTATATGTAGATCACGAGAATGATGTTTTACTTGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTTCCATATCCAGCAGGCAGCAGCTCTGATGGTGGGAATGCTTAA 3300 0.4418 MKAQPPDGAAAVAPNAGEGGEKKTINAELWQACAGPLLNLPSPGTHVVYFPQGHSEQVAASLKKDVDAQVPNYTNLPSKIPCLLHNVTLHADPDTDEVYAQMTLQPVPSFDTDALLRSDIFLRSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSVQPPAQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFIGGKRLLAGDSVLFVRDEKQQLLLGIRRANRQPSNLSSSVLSSDSMHIGVLAAAAQAVANNSPFTVFYNPRASPSEFVIPLAKYSKAVYSHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQVGWDESTAEERQSRVSVWEIEPVTTPYFICPPPFFRSKIPRLLGMPDDEPDFNNLFKSTVPWLGDDMCVKGPQALPGLSLVQWMNIQQNPALASSLQPNCGPSMSGLVLQNLPGADIANPLGFSTSQISQSNNVSVDAQNILQTSQQLDHIQKPPCPSSALGAVTQPLQQLGDITQQPRNLTNQTLPHDQAHTQLLNPQRVVQTNNIHQQQQSSIQKQQLLRSLSQNRAQKHQQTTLGLNERQIVFQSPMPDHFNQQLQMSDNQVRFQLLQKLQQQQQTLLAQQSALQQPALIQIQDQQRQLLDVANNSSSPIPGQVLENLPTLQNSLPEANSITHQITMPSSQKNFHYSHLSQQPALLSEMSGHVGLPPTVTTNPLSASGGSILTGVGQSVITDDVPSCSTSPSTNNRASVLPPVVSSQIHRSTTIGDDMAQSAVTISGASTLETMSSNANIVQPKYEVKASLNISKNQNQGNVAPQTYLNGVVQTDYLDSSSSTTSLYHFRSDTHMHQNTNPFSYNPQLVYCRDNSQNVEVQADARNNVLIGNNVNGQMGMPSNLDSLLTKGTVGLGKELSNKFASGGLLRDLENNKGVPPEISSSMVSQTFEVPDMSFNSIDSTIDGSGFLNRGPWDLPPPPPPQQQQVQRIRTYTKVYKRGAVGRSIDITRYSGYEDLKQDLALRFGIEGQLEDLQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPYPAGSSSDGGNA 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02154 1099 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Gma05g02154 1099 Gene3D - 130 233 IPR015300 -
Gma05g02154 1099 Gene3D - 982 1076 - -
Gma05g02154 1099 PANTHER AUXIN RESPONSE FACTOR 15 1084 - -
Gma05g02154 1099 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma05g02154 1099 ProSiteProfiles PB1 domain profile. 987 1071 IPR000270 GO:0005515
Gma05g02154 1099 SUPERFAMILY CAD & PB1 domains 1000 1065 - -
Gma05g02154 1099 SMART B3_2 132 234 IPR003340 GO:0003677
Gma05g02154 1099 Gene3D - 296 367 - -
Gma05g02154 1099 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 1084 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma05g02154 1099 CDD B3_DNA 131 223 IPR003340 GO:0003677
Gma05g02154 1099 Pfam AUX/IAA family 985 1072 IPR033389 -
Gma05g02154 1099 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Gma05g02154 1099 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02154 Gma-Chr5 42715510 42722129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02154 14 489 B3 DNA Binding Superfamily AT1G19220 66.597 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma05g02154 AUX_IAA 3.4e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02154 05 42715510 42722129 Gma05g02154 05 42715510 42722129 ECH