Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02148 ATGGGGATTTGCTTTAGCATTGAAGACCAAAACCACCTTTCCATCTCCGATTCCAACGCGAAGCCTAAACCTGCAGTAGGTCATGAATCTGGCGCTCCATTGGCTTCCATGAACATCAAAGATCTCCGCGAAGGTGCTGGATACAGCAATGTGGATATTTTTACCTACGAGGAGCTTAGGCTCGCGACGAAGCACTTTCGGCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATAGCGTGAGGTCGGGTTACAAGTCCACTGAAGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCGCGGAAGTTAACTATTTAGGTCAATTCAGTCACCCAAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGACCACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGGATTTCAACGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTAGAAGTGATGTGTATGGTTTTGGGGTGGTGCTGCTTGAAATGCTTATTGGTAGAAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCCCGTCCACTACTGAATCATAACAAAAAGCTTTTGAAAATTCTAGACCCAAAACTAGAGGGGCAATATTCAAGTAAAACGGCATTGAAGGTGGCCCATTTAGCATACCAGTGTCTTAGCCAAAACCCGAAAGGTAGACCACTAATGAGCCAGGTTGTTGAAATTCTCGAAAACTTTCAGTCAAAGGGGGAAAATGAGGAAGATCAAATGCTTCAAACTGGCGATACCAGTATAACCCTTTATGAGGTTCCTAAGGGCAGCAATGGCACTCCAACTTAG 1140 0.457 MGICFSIEDQNHLSISDSNAKPKPAVGHESGAPLASMNIKDLREGAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEDQMLQTGDTSITLYEVPKGSNGTPT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02148 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 19 374 - -
Gma05g02148 379 ProSiteProfiles Protein kinase domain profile. 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02148 379 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Gma05g02148 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Gma05g02148 379 Gene3D Transferase(Phosphotransferase) domain 1 149 368 - -
Gma05g02148 379 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Gma05g02148 379 Gene3D Phosphorylase Kinase; domain 1 42 148 - -
Gma05g02148 379 SUPERFAMILY Protein kinase-like (PK-like) 48 344 IPR011009 -
Gma05g02148 379 CDD STKc_IRAK 72 346 - -
Gma05g02148 379 PANTHER OS01G0588500 PROTEIN-RELATED 19 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02148 Gma-Chr5 42657981 42662885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02148 54 343 Glycoside Hydrolase AT3G07070 52.218 3.70e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma05g02148 PK_Tyr_Ser-Thr 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02148 - - gmx:100800465 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02148 05 42657981 42662885 Gma05g02148 05 42657981 42662885 ECH
Gma05g02148 05 42657981 42662885 Gma08g00257 08 2215135 2220395 GST