Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02121 ATGGAAGCGGATTTCGTCACCAGTGACATGCTCACACTCACGCAGGACGCTTTTTACGCCAACGATAATGATGATGTAGCTGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGACTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACTATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCTACTATTGAAGGAGATTCTGATCTCGATACATCAATAGCCTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCAGACAGTACATGGTTATGCCCCAGatgtgttgctgATGAAGTTTCTAAAGGAACATCCAATTCAGTAGAGAGGACAACCGTGGAATGTAATGCAGATAATCGTAATAGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACAGCTGTTGTTGTTTCAATGGTTGACCAAACAATATGGGTTCCGGCAACAAGTGAGAAAAGCCTATTGTCTTTTGAAGTTGGTGGGTACCCAATGACTGAATCATGTATTTTAATGTCTGACACAAATGGTCAGCAAAGTGGGGAAGTGAAGACAGAGACAAATACGTTACGAATCATGGAGGAAGAAGAACTGGAACTGTCTTTGTCAAACAACATATCCTGTAGCATAACTTCTAAATCCTTAGTGCATAATGATTTAAAGAAAAGTGTCAGTGGAGCAAGGGATGACCCAAGTGGCTTTGACGGAACCAAGTTATTCAACGAGTCCCTTACCAAAACTAGTCCATCCAGAATTGAATCTGAAATGGGTCTTCAACTTGGTTTGTCAGTGGGCTCTTTCTTATCTGTTGATAGTGCAGACAAGAATGAAACAAAAGATCAAGCAACTGATGTCCTGTGCTTGAGTTCAGAAGAATGTTTTTTGAAAGGAGATGAAATTGAAGCCAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATACTGATTATAGTGATGAGCAAGTTTATATAAAGGCTGATGATGGAGATGTCAAGCCTGAACTTCCAGAAGAAGATGACAAGCCTGAACTTCCGGATGAAATTGGACAAAAGAAAATTAGAGCTACCGGTAGTCAAATGACCAGTACTAATGACTCTGCAGATGCTCATCCCTTAGAAAATGCTCAGAAATGCCCTGCTTTAAAGCATTCTCCAACAAAGGCCATTGTCAAATCAAATATAATGAATATAGTTAAAGGGACAAACCGGAGGCAATCCAAGGGACGTACTGACACTAATGCTTGTGACAAGTTATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTCTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATCTAAGGCAAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAAAATCTAACCAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCGTGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGAATCAAAGCAAGCTTCTGAATGTCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCTCGGAAAGAGGATGTCAAACCTCTCTCTGTGCTTAAAACCATTGCTAACTCGGAGCAAACTAAGCATAACAACCCATCAGACAAAGCACCAAATCTATTTGTTGATAACAATACTAAAGCAACTAATGTATATAATCTTTTATCAAAGAACAGCGTTTGTTCATCTGAAAAAAAAGTAGATAAGAAGCTTGTACATGGTCCAGTTGGTGATAATTCAACTTCTGGTAAAGTACGTTCAAACAATCACTCAGAAAGGACATCGGTTTCATCAGCTGGTGCCAAAACTAGCACAAAAGAGTTAGGCCTTAAATTAGGTTGTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCGAGGAAAACAGCTGCCACAAGCAGGAACACAGCAAATGGAAATCAGGAAGACAATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTGCCAATTGATATGAGACCAGTATTGGCACCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGGCCCAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGGCTGTGATTCGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATGCAGTTAATATTGAAAAAGAAGTTGCTGACAGATCAAACAGCAAACTTGTGTATTTGAACCTTAGTTCACAAGAGCTCTTGCATCGCACAAATAACACAAAAACCAATGTAGCCACAGATACAAGTCCATCAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAACTTAATACTGATGATCTTTCAACTGACCCGGAAGTTGAAACAGCCTTGAAAAATGCTGGTCTGTTGTCTGATTCCCCACCTAGCAGTCCACATGAGAGCAGAGAAACATGTAATAGTGATATGTCAGGGCCTGATAATATACTTGAACTAGATTCTCATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCTAGTGTTACAAAGGTCTCAAATCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACGATGAATTTGAAAAAGTCAGATATCGCTTTGGATTGTGCAGACTGGGAGGGGTCTGAAAGAATTGAAGTGCCAGGAGATGCATCCTGCTCACCAAATTGTCACAATGATGCAGTCCTTAGGGACAGGGCTTCTACAATTGATGAGGAGATGGGCCAGCCTTCTGTTTCTTCTGAGCTCCTACCCTGTGAGGCTGCTGTTGAGCCACCTGACTCAGAATTTGAAGAATTATATGGCCCAGACAAAGAACCACTTATAAAAAAATTTCCAGTCAGTGAATCAAGATCATTACTTGGAGATGGCAAGACAGAAAATCTAAGTGTGGCCAATGATTGCCATAATGACGAAACAGAGGTCTTGGACGATGCAGTAAATGCTTCAGAACTTGAGAATGAGAATCTCACAGAAAAAGTTTCTGTTACTACCATCACTGACAAATCTTCTAATGTGTCTGAGGGTGGTGAAAATTCCCAAAAGAAGGAAGAGAAATCTAATGTCATTGCTAAGCAGACTGACTCTGTAAATCATGTAACTAAAAGGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAAGTGGGCTGTTGCAAAAACGACTGAGAAGGTTATGAAGTATCATTCCAAAGCAAAGAATGCTAATTTTCTCATAAAGGAAGGCGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACAGAAAAAATTGA 3924 0.4011 MEADFVTSDMLTLTQDAFYANDNDDVAVEGERCGICMDMVIDRGLLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSFFRDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVADEVSKGTSNSVERTTVECNADNRNSNSECHAEDSFSGKVSVSVADTGETAVVVSMVDQTIWVPATSEKSLLSFEVGGYPMTESCILMSDTNGQQSGEVKTETNTLRIMEEEELELSLSNNISCSITSKSLVHNDLKKSVSGARDDPSGFDGTKLFNESLTKTSPSRIESEMGLQLGLSVGSFLSVDSADKNETKDQATDVLCLSSEECFLKGDEIEANACKDNARVAGGKRKHTDYSDEQVYIKADDGDVKPELPEEDDKPELPDEIGQKKIRATGSQMTSTNDSADAHPLENAQKCPALKHSPTKAIVKSNIMNIVKGTNRRQSKGRTDTNACDKLSENKGNMAGLRVKKIMKRVSDDGESSLVVQNLRQEIREAVRNKSSINFEDNHFDPKLLEAFRAAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDSPESKQASECQAKNPILSRLYLADTSVFPRKEDVKPLSVLKTIANSEQTKHNNPSDKAPNLFVDNNTKATNVYNLLSKNSVCSSEKKVDKKLVHGPVGDNSTSGKVRSNNHSERTSVSSAGAKTSTKELGLKLGCMKSDKRKWALEVLARKTAATSRNTANGNQEDNAVFKGNYPLLAQLPIDMRPVLAPCRHNKIPISVRQAQLYRLTERLLRNTNLAVIRRTADTELAVADAVNIEKEVADRSNSKLVYLNLSSQELLHRTNNTKTNVATDTSPSASSAMLTDQQSELNTDDLSTDPEVETALKNAGLLSDSPPSSPHESRETCNSDMSGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASVTKVSNPKQEQNESKVKLVFSTMNLKKSDIALDCADWEGSERIEVPGDASCSPNCHNDAVLRDRASTIDEEMGQPSVSSELLPCEAAVEPPDSEFEELYGPDKEPLIKKFPVSESRSLLGDGKTENLSVANDCHNDETEVLDDAVNASELENENLTEKVSVTTITDKSSNVSEGGENSQKKEEKSNVIAKQTDSVNHVTKRVEAYIKEHIRPLCKSGVITADQYKWAVAKTTEKVMKYHSKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02121 1307 MobiDBLite consensus disorder prediction 934 1000 - -
Gma05g02121 1307 SUPERFAMILY RING/U-box 23 78 - -
Gma05g02121 1307 SMART PHD_3 131 183 IPR001965 -
Gma05g02121 1307 Pfam PHD-finger 146 183 IPR019787 -
Gma05g02121 1307 MobiDBLite consensus disorder prediction 763 794 - -
Gma05g02121 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 184 IPR013083 -
Gma05g02121 1307 MobiDBLite consensus disorder prediction 1201 1227 - -
Gma05g02121 1307 MobiDBLite consensus disorder prediction 427 449 - -
Gma05g02121 1307 PANTHER RING FINGER PROTEIN 41, 151 103 1304 - -
Gma05g02121 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 95 IPR013083 -
Gma05g02121 1307 MobiDBLite consensus disorder prediction 772 794 - -
Gma05g02121 1307 MobiDBLite consensus disorder prediction 934 969 - -
Gma05g02121 1307 Coils Coil 550 570 - -
Gma05g02121 1307 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Gma05g02121 1307 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Gma05g02121 1307 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Gma05g02121 1307 SUPERFAMILY FYVE/PHD zinc finger 146 185 IPR011011 -
Gma05g02121 1307 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Gma05g02121 1307 PANTHER RING/U-BOX PROTEIN 103 1304 - -
Gma05g02121 1307 Coils Coil 1290 1307 - -
Gma05g02121 1307 MobiDBLite consensus disorder prediction 981 1000 - -
Gma05g02121 1307 SMART ring_2 33 71 IPR001841 -
Gma05g02121 1307 SMART ring_2 123 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02121 Gma-Chr5 42417540 42427700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02121 27 75 C3H Transcription Factor Family AT2G39100 32.692 5.91e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma05g02121 PHD 3.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02121 - - gmx:100808102 2574.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02121 05 42417540 42427700 Gma05g02121 05 42417540 42427700 ECH
Gma05g02121 05 42417540 42427700 Gma08g00227 08 1930677 1941711 GST