Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02083 ATGGGAAACTGCAGCAGCGGGGCCGGAGCCCCCACCACCTACTCCGACGACCATCCCCACCACAACGGCATAACCGTCCTCCCTCCCAACTCAAACCCTTCACCCCAACTCCCCAAGCCCCCACCGACCTCCTCCTCCTCCTCGCTGGGCCGGGTTTTGGGCCGGCCCATGGAGGATGTCCGGTCCATTTACATATTCGGGCGGGAGCTGGGGCGCGGGCAGTTCGGCGTGACGTACCTGGTGACCCACAAGGCCACGAAGGAGCAGTTCGCGTGCAAGTCAATCGCGACGCGGAAGCTGGTCAACCGCGACGACATCGACGACATCCGCCGCGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTCGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAACCTCGTCATGGAGCTCTGCGCCGGCGGTGAGCTCTTCGACCGCATCATCACCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTCACCGTCGTCCATAACTGCCACTCCATGGGAGTCATGCATAGGGACTTGAAGCCCGAGAATTTCTTGTTGCTCAACAAGAACGATGATTCCCCCCTCAAGGCCACAGATTTTGGCCTCTCCGTCTTTTTTAAGCCAGGGGATGTGTTTAGAGACCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGAGAAGAAGTTATGGACCTGAAGCTGATATTTGGAGTGCAGGAGTTATATTGTACATTCTACTTTCTGGTGTTCCACCTTTTTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCATCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAGCGACTTTCAGCGGTTGAAGTACTTAATCATCCCTGGATGAGAGTGGATGGAGATGCACCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCCGAGCAATGAACAAGCTAAAAAAAGTAGCTCTGAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATTATTGGCTTGAAAGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACATTCGAAGAGTTGAAAGCTGGTCTCCCAAAATTGGGTACTAAACTTTCCGAATCTGAAGTTAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTTGACAATGATAAGAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTTAAGAAATATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATAACGCACATAACCCAAAGACGTCGCAAATAA 1554 0.4923 MGNCSSGAGAPTTYSDDHPHHNGITVLPPNSNPSPQLPKPPPTSSSSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKATKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLNKNDDSPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDAPDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDNDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHITQRRRK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02083 517 ProSiteProfiles EF-hand calcium-binding domain profile. 437 471 IPR002048 GO:0005509
Gma05g02083 517 Pfam Protein kinase domain 66 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02083 517 MobiDBLite consensus disorder prediction 1 52 - -
Gma05g02083 517 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Gma05g02083 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Gma05g02083 517 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Gma05g02083 517 Gene3D Transferase(Phosphotransferase) domain 1 150 328 - -
Gma05g02083 517 Pfam EF-hand domain pair 370 430 IPR002048 GO:0005509
Gma05g02083 517 Pfam EF-hand domain pair 440 502 IPR002048 GO:0005509
Gma05g02083 517 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Gma05g02083 517 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Gma05g02083 517 SUPERFAMILY Protein kinase-like (PK-like) 39 343 IPR011009 -
Gma05g02083 517 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02083 517 SMART efh_1 476 504 IPR002048 GO:0005509
Gma05g02083 517 SMART efh_1 369 397 IPR002048 GO:0005509
Gma05g02083 517 SMART efh_1 405 433 IPR002048 GO:0005509
Gma05g02083 517 SMART efh_1 441 469 IPR002048 GO:0005509
Gma05g02083 517 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Gma05g02083 517 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Gma05g02083 517 Gene3D - 330 506 - -
Gma05g02083 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 508 - -
Gma05g02083 517 SUPERFAMILY EF-hand 361 503 IPR011992 -
Gma05g02083 517 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma05g02083 517 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Gma05g02083 517 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Gma05g02083 517 CDD STKc_CAMK 64 321 - -
Gma05g02083 517 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 39 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02083 Gma-Chr5 42104891 42111333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02083 50 516 EF-hand Containing Proteins AT4G23650 79.872 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gma05g02083 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02083 K13412 - gmx:100777096 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02083 05 42104891 42111333 Gma05g02083 05 42104891 42111333 ECH
Gma05g02083 05 42104891 42111333 Gma08g00186 08 1641287 1646291 GST
Gma01g02232 01 57528276 57533404 Gma05g02083 05 42104891 42111333 PCT
Gma11g00183 11 1429109 1433698 Gma05g02083 05 42104891 42111333 PCT