Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02066 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACTACTCATGGATATGGCTGTTGGGGTGAAGTTCCAGAAAAAGCTGGGCTTCTAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAATTATAACTCTTCACGGGGTCGTGGGAAACAGATGGGCTCACATTGCAAGCCACCTGCCTGGTCGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAGATAAGAAAGACTTCGGTGTCTTCAACCACCATTGCACAAAGTATTGATCACAATTCTTCCCACCAGTTCAATTACAATTCCAATCTAGTACTAGACCACTTTCCCGACCAAGATAACAATCTACAAACAAAACCTCCAGTTCAAGAAGCCTTGTTTTCCTCAACATGCCCTCTGTTCATATTTGACACTACTGATTCACTAGAAGCTGGCACAGCAACAGACTGCAAGAGTAGTACTGTGCGAGCAGAACATTTTCATCAAGATGCTGTGGGTTTGAGCAGTGAAACATGGAACTCGAGCCACCATCAGGTTCATGCACTTCCACCTCTCACAGTGAGTGTAGGTTTGGACACCAGCAATTATTTGCCACCATTGATTGAGCACGTGGACAACATGGTCCCAATTGAGGTACAATCATGTACTATCGATGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGGTTAAATGAATGGGTGGAAACGCAGCAACAATGTCCTAATTTTCTTTTTTGGGACAGTGTTGAAGGACAACTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATACGCTTTCTCCTTTTCCTTGTTCTTTGTGA 963 0.4289 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWGEVPEKAGLLRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIITLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDHNSSHQFNYNSNLVLDHFPDQDNNLQTKPPVQEALFSSTCPLFIFDTTDSLEAGTATDCKSSTVRAEHFHQDAVGLSSETWNSSHHQVHALPPLTVSVGLDTSNYLPPLIEHVDNMVPIEVQSCTIDEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGQLGGEELAPNSSNVEANTLSPFPCSL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02066 320 CDD SANT 69 112 IPR001005 -
Gma05g02066 320 SMART sant 66 114 IPR001005 -
Gma05g02066 320 SMART sant 13 63 IPR001005 -
Gma05g02066 320 PANTHER MYB DOMAIN PROTEIN 55 1 318 - -
Gma05g02066 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma05g02066 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma05g02066 320 CDD SANT 17 61 IPR001005 -
Gma05g02066 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma05g02066 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma05g02066 320 Gene3D - 68 141 - -
Gma05g02066 320 PANTHER MYB TRANSCRIPTION FACTOR 1 318 - -
Gma05g02066 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma05g02066 320 Gene3D - 6 66 - -
Gma05g02066 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma05g02066 320 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02066 Gma-Chr5 41902685 41905130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02066 1 304 MYB Transcription Factor Family AT1G63910 50.568 9.96e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma05g02066 Myb_DNA-binding 4.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02066 K09422 K02947 gmx:100803556 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02066 05 41902685 41905130 Gma05g02066 05 41902685 41905130 ECH
Gma05g02066 05 41902685 41905130 Gma08g00168 08 1444710 1452348 GST
Gma01g02222 01 57429212 57431532 Gma05g02066 05 41902685 41905130 PCT
Gma11g00197 11 1547849 1549951 Gma05g02066 05 41902685 41905130 PCT