Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma05g02061 | ATGGAGATGCATGATGTTTGGCGCTGTTGTTGGAATTTTGTGGAGTCCACGTGTCAATTAAGCGAATCCGATGGAAAATGGTGTTGCAGCTATCAACATTGTCTGACGCAAACGGAAACGCGTCTTCACGACGCAGATCTACCTCTACACGAAGCCAATTTAGGGATTTTTTTTTTTTCTCATTCACGAACGGAGATCAGGTGTGGTCGGCGGCGGCACGAGGGAGGTTGGAAAGTGTCCCACACGGCGGATTTCGCTTGGGCTTCAGTGTCGCAGCACCCAAACGCTCCAACCGCGACTCTAAAACGCAACGTGACCGAGGTCTTCGTCGGGCCTCCGCTCCGGCCGCTATTTACTACTGTGGacagtgaatttGGAAAATTCTCACTCTCGACGGAGGCGGATCTTCGTGCTCTCGACGCGGAGCCTCGCTCACTCACTCTCGAATGCGAAGCCTCACTCTTGAACTTCTCTCTCTGCTGTATAAACATTCTAGTTATGGAAGATTCTGATCAACCAGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAGCCAGTTAATAAAAAGAATATAAGGAAACGAACTATTGTTAATGAAGATAATGAGGAGGACTCAAACAATGAAACTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGCCTGATAATAAGTTGTACTTTTCCACTGGTTCTTCAAAAAGCTCTGCATCTGCTGAACCCAGTGAAGAACCAGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAGCATGATAGCAAAGCAACTGCAACACTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGCCCAAGTTCTAAGAATGAAAAATTATATAAGGGAATGAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCGAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGACTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGAGAGGATGCAGATGAGGAGGGTGCTAATTTGACTGATGAAGATGATGAGGATTCTTTACCATTTGCCTGTTTCATTTGTAGAAACACTTTTGTGGATCCTGTAGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACTCTTGGCATTTTTAACGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATCATAA | 1488 | 0.4435 | MEMHDVWRCCWNFVESTCQLSESDGKWCCSYQHCLTQTETRLHDADLPLHEANLGIFFFSHSRTEIRCGRRRHEGGWKVSHTADFAWASVSQHPNAPTATLKRNVTEVFVGPPLRPLFTTVDSEFGKFSLSTEADLRALDAEPRSLTLECEASLLNFSLCCINILVMEDSDQPAKSAENQQTEQVCSFFRKPVNKKNIRKRTIVNEDNEEDSNNETSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPSEEPGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALKQAEESLKGKSPSSKNEKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDADEEGANLTDEDDEDSLPFACFICRNTFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKS | 495 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma05g02061 | 495 | SUPERFAMILY | RING/U-box | 434 | 477 | - | - | |
Gma05g02061 | 495 | ProSiteProfiles | Zinc finger C3H1-type profile. | 358 | 386 | IPR000571 | GO:0046872 | |
Gma05g02061 | 495 | PANTHER | ZINC FINGER PROTEIN 183 | 176 | 494 | IPR039971 | - | |
Gma05g02061 | 495 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 359 | 384 | IPR000571 | GO:0046872 | |
Gma05g02061 | 495 | ProSitePatterns | Zinc finger RING-type signature. | 450 | 459 | IPR017907 | - | |
Gma05g02061 | 495 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 433 | 492 | IPR013083 | - | |
Gma05g02061 | 495 | Pfam | Zinc finger, C3HC4 type (RING finger) | 434 | 476 | - | - | |
Gma05g02061 | 495 | MobiDBLite | consensus disorder prediction | 232 | 254 | - | - | |
Gma05g02061 | 495 | SUPERFAMILY | CCCH zinc finger | 357 | 389 | IPR036855 | GO:0046872 | |
Gma05g02061 | 495 | ProSiteProfiles | Zinc finger RING-type profile. | 435 | 473 | IPR001841 | - | |
Gma05g02061 | 495 | SMART | ring_2 | 435 | 472 | IPR001841 | - | |
Gma05g02061 | 495 | MobiDBLite | consensus disorder prediction | 232 | 246 | - | - | |
Gma05g02061 | 495 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE | 176 | 494 | - | - | |
Gma05g02061 | 495 | SMART | c3hfinal6 | 358 | 385 | IPR000571 | GO:0046872 | |
Gma05g02061 | 495 | Gene3D | - | 356 | 390 | - | - | |
Gma05g02061 | 495 | CDD | RING-HC_RNF113A_B | 433 | 473 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma05g02061 | Gma-Chr5 | 41859941 | 41867450 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma05g02061 | 173 | 495 | C2H2 Transcription Factor Family | AT1G01350 | 69.040 | 1.70e-163 | 464 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Gma05g02061 | zf-C3HC4_3 | 6.9e-09 | CL0229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma05g02061 | K13127 | - | gmx:100787434 | 644.039 |