Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02061 ATGGAGATGCATGATGTTTGGCGCTGTTGTTGGAATTTTGTGGAGTCCACGTGTCAATTAAGCGAATCCGATGGAAAATGGTGTTGCAGCTATCAACATTGTCTGACGCAAACGGAAACGCGTCTTCACGACGCAGATCTACCTCTACACGAAGCCAATTTAGGGATTTTTTTTTTTTCTCATTCACGAACGGAGATCAGGTGTGGTCGGCGGCGGCACGAGGGAGGTTGGAAAGTGTCCCACACGGCGGATTTCGCTTGGGCTTCAGTGTCGCAGCACCCAAACGCTCCAACCGCGACTCTAAAACGCAACGTGACCGAGGTCTTCGTCGGGCCTCCGCTCCGGCCGCTATTTACTACTGTGGacagtgaatttGGAAAATTCTCACTCTCGACGGAGGCGGATCTTCGTGCTCTCGACGCGGAGCCTCGCTCACTCACTCTCGAATGCGAAGCCTCACTCTTGAACTTCTCTCTCTGCTGTATAAACATTCTAGTTATGGAAGATTCTGATCAACCAGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAGCCAGTTAATAAAAAGAATATAAGGAAACGAACTATTGTTAATGAAGATAATGAGGAGGACTCAAACAATGAAACTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGCCTGATAATAAGTTGTACTTTTCCACTGGTTCTTCAAAAAGCTCTGCATCTGCTGAACCCAGTGAAGAACCAGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAGCATGATAGCAAAGCAACTGCAACACTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGCCCAAGTTCTAAGAATGAAAAATTATATAAGGGAATGAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCGAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGACTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGAGAGGATGCAGATGAGGAGGGTGCTAATTTGACTGATGAAGATGATGAGGATTCTTTACCATTTGCCTGTTTCATTTGTAGAAACACTTTTGTGGATCCTGTAGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACTCTTGGCATTTTTAACGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATCATAA 1488 0.4435 MEMHDVWRCCWNFVESTCQLSESDGKWCCSYQHCLTQTETRLHDADLPLHEANLGIFFFSHSRTEIRCGRRRHEGGWKVSHTADFAWASVSQHPNAPTATLKRNVTEVFVGPPLRPLFTTVDSEFGKFSLSTEADLRALDAEPRSLTLECEASLLNFSLCCINILVMEDSDQPAKSAENQQTEQVCSFFRKPVNKKNIRKRTIVNEDNEEDSNNETSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPSEEPGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALKQAEESLKGKSPSSKNEKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDADEEGANLTDEDDEDSLPFACFICRNTFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02061 495 SUPERFAMILY RING/U-box 434 477 - -
Gma05g02061 495 ProSiteProfiles Zinc finger C3H1-type profile. 358 386 IPR000571 GO:0046872
Gma05g02061 495 PANTHER ZINC FINGER PROTEIN 183 176 494 IPR039971 -
Gma05g02061 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 384 IPR000571 GO:0046872
Gma05g02061 495 ProSitePatterns Zinc finger RING-type signature. 450 459 IPR017907 -
Gma05g02061 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 492 IPR013083 -
Gma05g02061 495 Pfam Zinc finger, C3HC4 type (RING finger) 434 476 - -
Gma05g02061 495 MobiDBLite consensus disorder prediction 232 254 - -
Gma05g02061 495 SUPERFAMILY CCCH zinc finger 357 389 IPR036855 GO:0046872
Gma05g02061 495 ProSiteProfiles Zinc finger RING-type profile. 435 473 IPR001841 -
Gma05g02061 495 SMART ring_2 435 472 IPR001841 -
Gma05g02061 495 MobiDBLite consensus disorder prediction 232 246 - -
Gma05g02061 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 176 494 - -
Gma05g02061 495 SMART c3hfinal6 358 385 IPR000571 GO:0046872
Gma05g02061 495 Gene3D - 356 390 - -
Gma05g02061 495 CDD RING-HC_RNF113A_B 433 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02061 Gma-Chr5 41859941 41867450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02061 173 495 C2H2 Transcription Factor Family AT1G01350 69.040 1.70e-163 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma05g02061 zf-C3HC4_3 6.9e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02061 K13127 - gmx:100787434 644.039