Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02059 ATGGCTCGACAATTGTGTGAAGAAAAGTCCAAGGACATGGCTTCATCAAGTCATGGGTTGTTCTACTCAGATGTATCATCCAATAACCCAACTATCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCGGACATGTTCAACCTCACCACAGGTATGGATATGATAGGGTTTTCAAAGAACCTTCAGCAACACAGCGAAAGCAACGGTGTCATGATGTGGAAAAGTTTCTTCGGCAAACCAGGTCAACTCGCGGGTTCTTCCTCTTCCAAAACGATGAACGGGTCTTGTAGCAATTTTTATAACCAGCATGCTGATGCGTATAATACTAATAAGCAAGACTTCACATCAGGGATTTCTGAGACAAGTAGCGAGAACTTAGTTGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGGTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGTAACCAAAGGCCCAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAACCCTTTAAGTATTGGCTTGCAATCGTTTGAGCTAAGACAAACAAGCCATCATCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGTTTTTTCGGAAAACCAGTCAATGCTCAACAGCAGCAACAACAAATGTTGCAAGATGGGTATTTGAGTCCTAGCAAAGGTGCAAATATTTATCAGGGACATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGGTCCTTCTGAACGAGTTTTGTAGCCTAGGGACAAAGGAAAATGATGTACTACCAAAGCAAAAGTGCTCTCAAAAGAACAAGCAGTGGGAAGAAGGTAATAGCGGTGGTGGTTCCTCAAAGAACCATTCTCTTAGCTCTCTAGAGTATGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTCGCGATGCTGGAAGAGGTTGATAGAAGATACAAACACTACCGTAACCAAATGAAGGGTGTGGTGTCCTCCTTTGAAGCAGTGGCGGGTAATGGTGCAGCCACTGTTTACTCGGCTCTGGCTTTGAAAGCCATGTCAAGACATTTTAGGTGTTTGAAGGATGGAATTATGGATGAAATTGAAGCCACAAGAAAAGGCATGGGAGAGAAAGACCACGTAGCGGCAGTACCCGGCACAACAAGGGGCGAAACACCAAGGCTTAGAATCGTTGACCAATCGCTGAGACAACAAAGGGCCTTTCAGCAAATTAGCATCATGGAAACCCATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGTTCCGTTTCTGTTCTTCGAGCTTGGCTTTTTGAGCACTTTCTCCATCCGTACGTAATTCTTCTCCTCATCTTATTTGCCGTAATTCATTGCTAA 1383 0.4505 MARQLCEEKSKDMASSSHGLFYSDVSSNNPTIQPHLMNHIQGFVTDPDMFNLTTGMDMIGFSKNLQQHSESNGVMMWKSFFGKPGQLAGSSSSKTMNGSCSNFYNQHADAYNTNKQDFTSGISETSSENLVVGGAHDSAPWQENRLMVDDSSLRCVFPCEGNQRPSQGLSLSLSSTNPLSIGLQSFELRQTSHHQHLSDFVSREGFFGKPVNAQQQQQQMLQDGYLSPSKGANIYQGHFLIKNSKFLVPAQVLLNEFCSLGTKENDVLPKQKCSQKNKQWEEGNSGGGSSKNHSLSSLEYVELQKRKTKLLAMLEEVDRRYKHYRNQMKGVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMDEIEATRKGMGEKDHVAAVPGTTRGETPRLRIVDQSLRQQRAFQQISIMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYVILLLILFAVIHC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02059 460 Pfam Associated with HOX 241 366 IPR006563 -
Gma05g02059 460 Coils Coil 300 327 - -
Gma05g02059 460 Gene3D - 427 448 - -
Gma05g02059 460 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 447 - -
Gma05g02059 460 SMART prehox3 235 368 IPR006563 -
Gma05g02059 460 MobiDBLite consensus disorder prediction 273 293 - -
Gma05g02059 460 MobiDBLite consensus disorder prediction 278 293 - -
Gma05g02059 460 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02059 Gma-Chr5 41842261 41844156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02059 122 447 Homeobox Transcription Factor Family AT5G41410 45.455 3.04e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02059 - - gmx:100787954 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02059 05 41842261 41844156 Gma05g02059 05 41842261 41844156 ECH
Gma05g02059 05 41842261 41844156 Gma08g00162 08 1391922 1395798 GST
Gma01g02215 01 57376929 57380785 Gma05g02059 05 41842261 41844156 PCT
Gma11g00202 11 1592377 1595541 Gma05g02059 05 41842261 41844156 PCT